Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   MGCS36044_RS10625 Genome accession   NZ_CP117287
Coordinates   1642368..1643033 (-) Length   221 a.a.
NCBI ID   WP_012767419.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain MGCS36044     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1637368..1648033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGCS36044_RS08130 (MGCS36044_03278) - 1640630..1641610 (-) 981 WP_014612498.1 IS30 family transposase -
  MGCS36044_RS08135 (MGCS36044_03280) hpf 1641740..1642288 (-) 549 WP_084916484.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  MGCS36044_RS10625 (MGCS36044_03282) comFC/cflB 1642368..1643033 (-) 666 WP_012767419.1 ComF family protein Machinery gene
  MGCS36044_RS08145 (MGCS36044_03284) comFA/cflA 1643005..1644330 (-) 1326 WP_015017291.1 DEAD/DEAH box helicase Machinery gene
  MGCS36044_RS08150 (MGCS36044_03286) - 1644386..1645024 (+) 639 WP_084916482.1 YigZ family protein -
  MGCS36044_RS08155 (MGCS36044_03288) cysK 1645128..1646063 (+) 936 WP_084916480.1 cysteine synthase A -
  MGCS36044_RS08160 (MGCS36044_03290) - 1646216..1646575 (-) 360 WP_003056775.1 S1 RNA-binding domain-containing protein -
  MGCS36044_RS08165 (MGCS36044_03292) - 1646575..1647975 (-) 1401 WP_042357970.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25364.39 Da        Isoelectric Point: 8.7003

>NTDB_id=717666 MGCS36044_RS10625 WP_012767419.1 1642368..1643033(-) (comFC/cflB) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS36044]
MICLLCQQFSPLPLRITDILFLKPQTTTLCQECQQGFQKISFTSCQTCNAPSQSSPCSDCLEWKVKGYEVNHKSLYQYNA
AMKAYFSQYKFQGDYLLRHVFAQELAQVIKKDYPDFTPVPVPISKERYEERHFNQVTAILEAGNINYCMLFKRMDTSRQS
SKTKNERLLSKDAYRLSTLSELPAKILIIDDIYTTGSTIIALKKLLMHVGNSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=717666 MGCS36044_RS10625 WP_012767419.1 1642368..1643033(-) (comFC/cflB) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS36044]
ATGATATGCCTCCTATGTCAACAATTTAGTCCATTACCCTTGCGAATAACGGATATTCTCTTTTTGAAACCTCAAACAAC
AACTCTCTGTCAGGAGTGTCAACAAGGGTTTCAAAAGATAAGCTTCACGAGTTGCCAAACCTGTAACGCTCCTTCCCAAA
GCTCTCCATGTTCTGATTGTTTAGAATGGAAAGTCAAAGGATACGAGGTTAATCACAAAAGTTTATATCAGTATAACGCT
GCTATGAAAGCTTATTTTAGCCAATATAAGTTTCAAGGAGACTACTTGCTAAGACATGTCTTTGCTCAAGAATTAGCCCA
AGTTATTAAAAAAGACTATCCAGATTTTACTCCTGTTCCAGTTCCTATCAGTAAGGAGCGTTATGAAGAACGTCATTTCA
ATCAAGTGACTGCTATACTTGAAGCAGGGAATATTAACTATTGCATGCTTTTTAAAAGAATGGATACTAGCCGTCAGTCT
TCTAAAACTAAAAATGAAAGATTATTATCCAAAGATGCCTATCGTCTCTCCACCCTCTCTGAATTACCAGCAAAAATCCT
CATTATTGATGATATTTACACTACCGGTAGCACCATTATCGCTTTGAAAAAACTATTAATGCATGTTGGAAATAGTGACA
TCAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae TIGR4

40.724

100

0.407
  comFC/cflB Streptococcus pneumoniae Rx1

40.271

100

0.403
  comFC/cflB Streptococcus pneumoniae D39

40.271

100

0.403
  comFC/cflB Streptococcus pneumoniae R6

40.271

100

0.403