Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   NUU08_RS11400 Genome accession   NZ_CP102522
Coordinates   2226928..2227254 (-) Length   108 a.a.
NCBI ID   WP_058221568.1    Uniprot ID   -
Organism   Lactococcus lactis strain R-707-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2221928..2232254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUU08_RS11375 (NUU08_11365) - 2222808..2223617 (-) 810 WP_014570791.1 metal ABC transporter permease -
  NUU08_RS11380 (NUU08_11370) - 2223610..2224347 (-) 738 WP_058221575.1 metal ABC transporter ATP-binding protein -
  NUU08_RS11385 (NUU08_11375) - 2224524..2225366 (-) 843 WP_003129990.1 metal ABC transporter substrate-binding protein -
  NUU08_RS11390 (NUU08_11380) - 2225363..2225800 (-) 438 WP_003129992.1 zinc-dependent MarR family transcriptional regulator -
  NUU08_RS11395 (NUU08_11385) - 2226007..2226954 (+) 948 WP_003130410.1 IS30 family transposase -
  NUU08_RS11400 (NUU08_11390) comGG 2226928..2227254 (-) 327 WP_058221568.1 competence type IV pilus minor pilin ComGG Machinery gene
  NUU08_RS11405 (NUU08_11395) comGF 2227304..2227732 (-) 429 Protein_2221 competence type IV pilus minor pilin ComGF -
  NUU08_RS11410 (NUU08_11400) comGE 2227695..2227991 (-) 297 WP_010906316.1 competence type IV pilus minor pilin ComGE Machinery gene
  NUU08_RS11415 (NUU08_11405) comGD 2227963..2228394 (-) 432 WP_080585155.1 competence type IV pilus minor pilin ComGD Machinery gene
  NUU08_RS11420 (NUU08_11410) comGC 2228354..2228623 (-) 270 WP_003129998.1 competence type IV pilus major pilin ComGC Machinery gene
  NUU08_RS11425 (NUU08_11415) - 2228750..2229496 (-) 747 WP_058221567.1 hypothetical protein -
  NUU08_RS11430 (NUU08_11420) - 2229684..2230463 (-) 780 WP_082225220.1 peptidoglycan amidohydrolase family protein -
  NUU08_RS11435 (NUU08_11425) - 2230463..2230762 (-) 300 WP_031559226.1 phage holin -
  NUU08_RS11440 (NUU08_11430) - 2230775..2231125 (-) 351 WP_014570798.1 hypothetical protein -
  NUU08_RS11445 (NUU08_11435) - 2231138..2231374 (-) 237 WP_082225257.1 hypothetical protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12234.69 Da        Isoelectric Point: 6.0669

>NTDB_id=717462 NUU08_RS11400 WP_058221568.1 2226928..2227254(-) (comGG) [Lactococcus lactis strain R-707-1]
MFSMFLQFYLERQIDDARQLRSEKEQLTAELMVSVALKTDLKSQGQIHFDSGDLSYNLLTDSSASSKITDHSSDENTYQF
SIHLKDGANFQIKNANCKSKLASQAHLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=717462 NUU08_RS11400 WP_058221568.1 2226928..2227254(-) (comGG) [Lactococcus lactis strain R-707-1]
ATGTTTTCAATGTTTCTTCAGTTCTATTTGGAAAGGCAAATAGATGATGCTCGACAATTAAGAAGTGAAAAGGAGCAGTT
AACAGCTGAATTAATGGTGTCAGTAGCTTTAAAGACTGATTTAAAATCTCAAGGTCAAATTCATTTTGATTCAGGAGATT
TGTCCTACAATTTACTGACAGATTCGTCAGCCAGTTCAAAAATTACTGACCATTCAAGTGATGAAAATACCTATCAATTT
AGTATCCATCTAAAAGATGGCGCAAACTTTCAAATAAAAAACGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCT
CATATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Lactococcus lactis subsp. cremoris KW2

58.065

86.111

0.5