Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   NRG74_RS14105 Genome accession   NZ_CP102428
Coordinates   3053356..3055605 (-) Length   749 a.a.
NCBI ID   WP_257704593.1    Uniprot ID   -
Organism   Pseudomonas oryzihabitans strain YY7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3048356..3060605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRG74_RS14090 (NRG74_14090) - 3050074..3051666 (-) 1593 WP_257704588.1 AAA family ATPase -
  NRG74_RS14095 (NRG74_14095) aroB 3051685..3052779 (-) 1095 WP_257704590.1 3-dehydroquinate synthase -
  NRG74_RS14100 (NRG74_14100) aroK 3052832..3053350 (-) 519 WP_026083835.1 shikimate kinase AroK -
  NRG74_RS14105 (NRG74_14105) pilQ 3053356..3055605 (-) 2250 WP_257704593.1 type IV pilus secretin PilQ Machinery gene
  NRG74_RS14110 (NRG74_14110) - 3055605..3056123 (-) 519 WP_026083837.1 pilus assembly protein PilP -
  NRG74_RS14115 (NRG74_14115) pilO 3056120..3056773 (-) 654 WP_017641025.1 type 4a pilus biogenesis protein PilO -
  NRG74_RS14120 (NRG74_14120) - 3056770..3057357 (-) 588 WP_017641026.1 PilN domain-containing protein -
  NRG74_RS14125 (NRG74_14125) comM 3057358..3058422 (-) 1065 WP_026083838.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 749 a.a.        Molecular weight: 80096.87 Da        Isoelectric Point: 9.3379

>NTDB_id=716929 NRG74_RS14105 WP_257704593.1 3053356..3055605(-) (pilQ) [Pseudomonas oryzihabitans strain YY7]
MGGASTVKTNSARRLGLGLALLLGSLAGQVLAADLQALNVASLPGDRIELKLTFDQPVPIPKGYTIEQPARIALDLPGVA
NKLGTKSRELGNGNARSVTVVEAGNRTRLIINLTNLASYDTRADGRNLFVTIGGTAGRQAAGAQANLTPNLPRAAAPATV
TAPSSAPLPSAVTRTPLPPTQATSTVAAMTAPRPQLRGKAIRHLDFQRGPQGEGNVVIDLSETGINPDIQEQGGKIRLTF
AGTQLPEELRVRLDVKDFATPVQFVNASADSSGASIVIEPTGTYDYLAYQTNNRLTLSVKPLTTEEKEKRAADRFTYTGE
KLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGNITLRLQNVPWDQALDLILKTKGLDKRQIGNVLLVAPADEIAARER
QELESQKQIQQLAPLRRDLIQVNYAKAADIAKLFQSVTSADKTADERGSISVDERTNSIIAYQTQNRLDELRRIVSQLDI
PVRQVMIEARLVEANVDYSKQLGVRWGGNTRQGNFAVYGKDGATTVDSTTNQAFLPGTSTIGNVTSATGLAPTPFVDMGV
SGSTSGIGIGFMAGGQMLDLQLSALQSSGNGEIISQPKVVTSDKETAKILRGTEIPYQEASSSGATSTSFKQAALSLEVT
PQITPDNRIIMEVKVNKDAPDYQNALNGVPPISKNEVNAKVLVSDGETIVLGGVFSNTQTKSTTKVPMLGDIPYVGRLFR
RDSVTDSKVELLIFLTPRIMNNQAIAVGR

Nucleotide


Download         Length: 2250 bp        

>NTDB_id=716929 NRG74_RS14105 WP_257704593.1 3053356..3055605(-) (pilQ) [Pseudomonas oryzihabitans strain YY7]
ATGGGCGGGGCAAGTACAGTGAAGACGAATAGCGCAAGACGGCTGGGACTGGGATTGGCCTTGTTGCTGGGTAGCCTGGC
CGGCCAGGTCCTGGCCGCCGATCTGCAGGCCTTGAACGTCGCCTCCCTGCCCGGGGATCGCATCGAACTCAAGCTGACCT
TCGATCAGCCGGTGCCGATCCCCAAGGGCTACACCATCGAGCAGCCGGCGCGGATCGCTCTGGACCTGCCCGGCGTGGCC
AACAAGCTGGGTACCAAGAGCCGCGAGCTGGGCAATGGCAATGCCCGCAGCGTGACGGTGGTCGAGGCGGGCAACCGGAC
CCGGCTGATCATCAACCTCACCAATCTGGCCAGCTACGACACCCGTGCCGACGGTCGCAACCTGTTCGTCACCATCGGCG
GTACCGCGGGTCGCCAGGCGGCCGGCGCCCAGGCCAACCTGACGCCGAACCTGCCGCGTGCCGCGGCGCCGGCCACCGTG
ACCGCGCCGTCGTCCGCCCCGCTGCCCAGCGCCGTCACCCGCACGCCACTGCCGCCGACTCAGGCCACTTCCACCGTGGC
GGCCATGACCGCGCCGCGGCCGCAACTGCGCGGCAAGGCGATCCGTCATCTCGACTTCCAGCGGGGTCCCCAGGGCGAGG
GCAACGTGGTCATCGACCTGAGCGAGACCGGCATCAACCCGGACATCCAGGAGCAGGGCGGCAAGATCCGCCTGACCTTC
GCCGGCACTCAGTTGCCCGAGGAGTTGCGGGTACGGCTGGACGTCAAGGACTTCGCCACCCCGGTGCAGTTCGTCAACGC
CTCCGCCGACAGCAGCGGGGCGTCCATCGTCATCGAGCCGACCGGAACCTACGACTACCTGGCCTACCAGACCAACAATC
GCCTGACCCTGAGCGTCAAGCCGCTCACCACCGAGGAAAAGGAAAAGCGCGCAGCCGATCGCTTCACCTACACCGGCGAA
AAGCTGTCGCTGAACTTCCAGGACATCGACGTCCGCTCGGTGCTGCAGCTGATCGCCGACTTCACCAACCTCAACCTGGT
GGCGAGCGACACCGTGCAGGGCAACATCACCCTGCGCCTGCAGAACGTACCCTGGGATCAGGCGCTGGACTTGATCCTCA
AGACCAAGGGCCTGGACAAGCGCCAGATCGGCAACGTGCTGCTGGTCGCGCCGGCCGACGAGATCGCCGCGCGTGAGCGC
CAGGAGCTGGAATCCCAGAAACAGATCCAGCAGCTCGCTCCCCTGCGGCGCGACCTGATCCAGGTCAACTATGCCAAGGC
CGCCGACATCGCCAAGTTGTTCCAGTCGGTGACCAGTGCCGACAAGACCGCCGACGAGCGTGGCTCCATCTCGGTGGACG
AGCGTACCAACAGCATCATCGCCTACCAGACCCAGAATCGCCTGGACGAACTGCGGCGCATCGTCTCGCAGCTGGACATC
CCGGTACGTCAGGTGATGATCGAGGCGCGGCTGGTGGAAGCCAACGTCGACTACAGCAAGCAGCTGGGCGTTCGCTGGGG
CGGCAATACTCGCCAGGGCAATTTCGCGGTCTATGGCAAGGATGGCGCGACGACCGTTGATAGCACCACTAACCAGGCTT
TCCTGCCTGGAACCAGTACCATCGGTAACGTCACCTCTGCCACTGGCCTCGCGCCCACGCCCTTCGTGGACATGGGCGTC
TCCGGCAGCACTTCGGGCATCGGCATCGGTTTCATGGCTGGTGGTCAGATGCTCGACCTGCAGCTGTCCGCTCTGCAATC
TAGCGGCAATGGCGAGATCATCTCCCAGCCCAAGGTGGTGACCTCGGACAAGGAGACCGCCAAGATCCTGCGCGGTACCG
AAATCCCCTACCAGGAAGCCAGCTCCAGCGGTGCCACCAGCACCAGCTTCAAGCAGGCCGCTCTGTCGCTGGAGGTCACG
CCGCAGATCACTCCGGACAACCGCATCATCATGGAGGTCAAGGTCAACAAGGATGCACCTGACTACCAGAACGCGCTCAA
TGGCGTGCCGCCGATCAGCAAGAACGAGGTCAATGCCAAGGTCCTGGTGAGCGATGGCGAGACCATCGTGCTGGGCGGGG
TGTTCTCCAACACCCAGACCAAGTCCACCACCAAGGTGCCGATGCTGGGGGATATTCCCTATGTCGGTCGGCTGTTCCGC
CGGGATTCGGTCACCGACAGCAAAGTCGAGCTGCTGATCTTCCTCACGCCGCGTATCATGAACAACCAGGCGATAGCGGT
TGGTCGATGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(584-740)

Secretin and TonB N terminus short domain (STN)

(345-391)

AMIN domain (AMIN)

(47-132)

Bacterial type II/III secretion system short domain (Secretin_N)

(420-484)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

70.149

98.398

0.69
  comQ Acinetobacter baylyi ADP1

40.775

99.866

0.407
  pilQ Acinetobacter baumannii strain A118

39.595

98.798

0.391
  pilQ Acinetobacter baumannii D1279779

39.595

98.798

0.391