Detailed information NTG0716299

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: PPK11_RS00655
• Genome accession: NZ_CP117024
• Coordinates: 125613..126848 (-)
• Length: 411 a.a.
• NCBI ID: WP_273898076.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 444A6
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 120613..131848

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PPK11_RS00615	-	120717..122459 (-)	1743	WP_273898064.1	type IV secretory system conjugative DNA transfer family protein	-
PPK11_RS00620	-	122460..123017 (-)	558	WP_273898066.1	hypothetical protein	-
PPK11_RS00625	-	123018..123308 (-)	291	WP_000159819.1	hypothetical protein	-
PPK11_RS00630	-	123305..123760 (-)	456	WP_108310673.1	mobilization protein	-
PPK11_RS00635	-	123757..124698 (-)	942	WP_154547739.1	CpaF/VirB11 family protein	-
PPK11_RS00640	-	124698..124997 (-)	300	WP_180581140.1	hypothetical protein	-
PPK11_RS00645	-	124994..125257 (-)	264	WP_000564645.1	hypothetical protein	-
PPK11_RS00650	-	125250..125543 (-)	294	WP_273898074.1	hypothetical protein	-
PPK11_RS00655	comB10	125613..126848 (-)	1236	WP_273898076.1	DNA type IV secretion system protein ComB10	Machinery gene
PPK11_RS00660	-	126845..128385 (-)	1541	Protein_114	TrbG/VirB9 family P-type conjugative transfer protein	-
PPK11_RS00665	-	128385..129371 (-)	987	WP_273898078.1	type IV secretion system protein	-
PPK11_RS00670	-	129500..131434 (-)	1935	WP_273899165.1	type IA DNA topoisomerase	-

Sequence

Protein

• Length: 411 a.a.
• Molecular weight: 46442.55 Da
• Isoelectric Point: 10.0434

>NTDB_id=716299 PPK11_RS00655 WP_273898076.1 125613..126848(-) (comB10) [Helicobacter pylori strain 444A6]
MKKLLLLLEHKIVKIGLIIVIVLVGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPSFKYNTANEEEKTRLVILASRISSQKETQPPTSIKNSVSNTKSK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK

Nucleotide

• Length: 1236 bp

>NTDB_id=716299 PPK11_RS00655 WP_273898076.1 125613..126848(-) (comB10) [Helicobacter pylori strain 444A6]
ATGAAAAAACTTCTTTTACTCTTGGAGCATAAGATCGTAAAAATTGGATTAATTATTGTGATTGTGTTAGTGGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCTCTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATCCTTCAAATACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TGGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAGCCTCCAACCTCTATAAAAAATAGTGTTTCTAACACAAAATCCAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGCAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGCTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAGGGGGCTGATGTCAAAGGCTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAAGGGTGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTAAATAACATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATCAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (192-387)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	46.348	96.594	0.448