Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   M0P28_RS11775 Genome accession   NZ_CP116958
Coordinates   2311984..2312577 (-) Length   197 a.a.
NCBI ID   WP_003066922.1    Uniprot ID   E0PGF6
Organism   Streptococcus pasteurianus strain WUSP074     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2306984..2317577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P28_RS11735 (M0P28_11735) cinA 2307016..2308275 (-) 1260 WP_003066899.1 competence/damage-inducible protein A Machinery gene
  M0P28_RS11740 (M0P28_11740) - 2308407..2309597 (-) 1191 WP_048790986.1 MFS transporter -
  M0P28_RS11745 (M0P28_11745) - 2309757..2309930 (-) 174 WP_048790985.1 hypothetical protein -
  M0P28_RS11750 (M0P28_11750) - 2309980..2310189 (-) 210 WP_231729899.1 hypothetical protein -
  M0P28_RS11755 (M0P28_11755) - 2310147..2310428 (-) 282 WP_003066911.1 hypothetical protein -
  M0P28_RS11760 (M0P28_11760) - 2310498..2310707 (-) 210 WP_003066913.1 hypothetical protein -
  M0P28_RS11765 (M0P28_11765) - 2310729..2310905 (-) 177 WP_003066916.1 hypothetical protein -
  M0P28_RS11770 (M0P28_11770) - 2311053..2311904 (+) 852 WP_003066919.1 helix-turn-helix domain-containing protein -
  M0P28_RS11775 (M0P28_11775) ruvA 2311984..2312577 (-) 594 WP_003066922.1 Holliday junction branch migration protein RuvA Machinery gene
  M0P28_RS11780 (M0P28_11780) hexB 2312579..2314522 (-) 1944 WP_117479524.1 DNA mismatch repair endonuclease MutL Machinery gene
  M0P28_RS11785 (M0P28_11785) hexA 2314639..2317209 (-) 2571 WP_003066925.1 DNA mismatch repair protein MutS Machinery gene
  M0P28_RS11790 (M0P28_11790) - 2317196..2317552 (-) 357 WP_003066927.1 YlbF family regulator -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21782.20 Da        Isoelectric Point: 5.3568

>NTDB_id=715322 M0P28_RS11775 WP_003066922.1 2311984..2312577(-) (ruvA) [Streptococcus pasteurianus strain WUSP074]
MYDYIKGKLTKITAKYIVIEAGGLGYIVNVANPYSFSDLVNQEVQIYLHQVIREDAQLLFGFHTEDEKAVFLNLISVSGI
GPTTALAIIAVDDNEGLVNAIDTSDIKYLMKFPKIGKKTAQQMVLDLAGKFVDVSVENGKASQTKTATNEQLEEAMEALL
ALGYKAAELKKIRKFFEGTNETAEQYIKSSLKMLMKA

Nucleotide


Download         Length: 594 bp        

>NTDB_id=715322 M0P28_RS11775 WP_003066922.1 2311984..2312577(-) (ruvA) [Streptococcus pasteurianus strain WUSP074]
ATGTATGATTATATCAAAGGAAAATTAACTAAAATTACCGCCAAATACATTGTTATCGAGGCTGGAGGGCTGGGCTATAT
TGTCAACGTTGCTAACCCATACAGTTTTTCAGACCTTGTCAACCAAGAGGTTCAGATTTATTTACACCAAGTCATTCGTG
AAGATGCGCAATTGTTATTTGGTTTTCACACAGAAGATGAAAAAGCTGTTTTTCTTAACTTGATTTCAGTTTCTGGGATT
GGTCCGACAACTGCGCTAGCGATTATTGCGGTTGATGATAATGAAGGGCTTGTCAATGCGATTGACACTAGTGATATCAA
GTATTTGATGAAATTTCCAAAAATTGGAAAAAAGACAGCTCAACAAATGGTCTTGGATTTAGCAGGAAAATTTGTCGATG
TTTCGGTGGAAAATGGCAAAGCTTCTCAGACAAAAACAGCTACAAACGAGCAGCTTGAGGAAGCTATGGAAGCTCTTTTG
GCACTTGGCTATAAAGCTGCAGAGCTCAAGAAAATTCGTAAGTTCTTTGAAGGAACAAATGAAACAGCAGAACAATACAT
CAAATCAAGCCTTAAAATGTTGATGAAAGCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0PGF6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

69.192

100

0.695
  ruvA Streptococcus pneumoniae D39

69.192

100

0.695
  ruvA Streptococcus pneumoniae TIGR4

69.036

100

0.69
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.426