Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   M0P24_RS11375 Genome accession   NZ_CP116957
Coordinates   2219882..2220475 (-) Length   197 a.a.
NCBI ID   WP_003066922.1    Uniprot ID   E0PGF6
Organism   Streptococcus pasteurianus strain WUSP070     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2214882..2225475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P24_RS11350 (M0P24_11350) - 2216485..2217432 (-) 948 WP_230321698.1 MFS transporter -
  M0P24_RS11355 (M0P24_11355) - 2218025..2218327 (-) 303 WP_230321699.1 hypothetical protein -
  M0P24_RS11360 (M0P24_11360) - 2218397..2218567 (-) 171 WP_231729898.1 hypothetical protein -
  M0P24_RS11365 (M0P24_11365) - 2218628..2218804 (-) 177 WP_230321700.1 hypothetical protein -
  M0P24_RS11370 (M0P24_11370) - 2218951..2219802 (+) 852 WP_013852329.1 helix-turn-helix domain-containing protein -
  M0P24_RS11375 (M0P24_11375) ruvA 2219882..2220475 (-) 594 WP_003066922.1 Holliday junction branch migration protein RuvA Machinery gene
  M0P24_RS11380 (M0P24_11380) hexB 2220477..2222399 (-) 1923 WP_111718472.1 DNA mismatch repair endonuclease MutL Machinery gene
  M0P24_RS11385 (M0P24_11385) hexA 2222516..2225086 (-) 2571 WP_013852331.1 DNA mismatch repair protein MutS Machinery gene
  M0P24_RS11390 (M0P24_11390) - 2225073..2225429 (-) 357 WP_003066927.1 YlbF family regulator -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21782.20 Da        Isoelectric Point: 5.3568

>NTDB_id=715210 M0P24_RS11375 WP_003066922.1 2219882..2220475(-) (ruvA) [Streptococcus pasteurianus strain WUSP070]
MYDYIKGKLTKITAKYIVIEAGGLGYIVNVANPYSFSDLVNQEVQIYLHQVIREDAQLLFGFHTEDEKAVFLNLISVSGI
GPTTALAIIAVDDNEGLVNAIDTSDIKYLMKFPKIGKKTAQQMVLDLAGKFVDVSVENGKASQTKTATNEQLEEAMEALL
ALGYKAAELKKIRKFFEGTNETAEQYIKSSLKMLMKA

Nucleotide


Download         Length: 594 bp        

>NTDB_id=715210 M0P24_RS11375 WP_003066922.1 2219882..2220475(-) (ruvA) [Streptococcus pasteurianus strain WUSP070]
ATGTATGATTATATCAAAGGAAAATTAACTAAAATTACCGCCAAATACATTGTTATCGAGGCTGGAGGGCTGGGCTATAT
TGTCAACGTTGCTAACCCATACAGTTTTTCAGACCTTGTCAACCAAGAGGTTCAGATTTATTTACACCAAGTCATTCGTG
AAGATGCGCAATTGTTATTTGGTTTTCACACAGAAGATGAAAAAGCTGTTTTTCTTAACTTGATTTCAGTTTCTGGGATT
GGTCCGACAACTGCGCTAGCGATTATTGCGGTTGATGATAATGAAGGGCTTGTCAATGCGATTGACACTAGTGATATCAA
GTATTTGATGAAATTTCCAAAAATTGGAAAAAAGACAGCTCAACAAATGGTCTTGGATTTAGCAGGAAAATTTGTCGATG
TTTCGGTGGAAAATGGCAAAGCTTCTCAGACAAAAACAGCTACAAACGAGCAGCTTGAGGAAGCTATGGAAGCTCTTTTG
GCACTTGGCTATAAAGCTGCAGAGCTCAAGAAAATTCGTAAGTTCTTTGAAGGAACAAATGAAACAGCAGAACAATACAT
CAAATCAAGCCTTAAAATGTTGATGAAAGCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0PGF6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

69.192

100

0.695
  ruvA Streptococcus pneumoniae D39

69.192

100

0.695
  ruvA Streptococcus pneumoniae TIGR4

69.036

100

0.69
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.426