Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | NQ602_RS26495 | Genome accession | NZ_CP102174 |
| Coordinates | 5647779..5648651 (+) | Length | 290 a.a. |
| NCBI ID | WP_003094651.1 | Uniprot ID | A0AAQ3LID6 |
| Organism | Pseudomonas aeruginosa strain PA5083 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5642779..5653651
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NQ602_RS26470 (NQ602_26470) | nadC | 5643105..5643953 (+) | 849 | WP_003094645.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| NQ602_RS26480 (NQ602_26480) | - | 5644157..5644621 (-) | 465 | WP_031630343.1 | pilin | - |
| NQ602_RS26485 (NQ602_26485) | pilB | 5644851..5646551 (+) | 1701 | WP_003094647.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| NQ602_RS26490 (NQ602_26490) | pilC | 5646555..5647775 (+) | 1221 | WP_003094649.1 | type II secretion system F family protein | Machinery gene |
| NQ602_RS26495 (NQ602_26495) | pilD | 5647779..5648651 (+) | 873 | WP_003094651.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| NQ602_RS26500 (NQ602_26500) | coaE | 5648648..5649259 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| NQ602_RS26505 (NQ602_26505) | yacG | 5649256..5649456 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| NQ602_RS26510 (NQ602_26510) | - | 5649493..5649702 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| NQ602_RS26515 (NQ602_26515) | - | 5649808..5650497 (-) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| NQ602_RS26520 (NQ602_26520) | - | 5650494..5650964 (-) | 471 | WP_003094664.1 | hypothetical protein | - |
| NQ602_RS26525 (NQ602_26525) | - | 5650961..5651386 (-) | 426 | WP_003094666.1 | GNAT family N-acetyltransferase | - |
| NQ602_RS26530 (NQ602_26530) | - | 5651519..5652148 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| NQ602_RS26535 (NQ602_26535) | - | 5652145..5652594 (+) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| NQ602_RS26540 (NQ602_26540) | - | 5652620..5652790 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31852.89 Da Isoelectric Point: 7.7068
>NTDB_id=715189 NQ602_RS26495 WP_003094651.1 5647779..5648651(+) (pilD) [Pseudomonas aeruginosa strain PA5083]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQANYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQANYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=715189 NQ602_RS26495 WP_003094651.1 5647779..5648651(+) (pilD) [Pseudomonas aeruginosa strain PA5083]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGAACTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGAACTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.516 |
96.897 |
0.538 |
| pilD | Vibrio campbellii strain DS40M4 |
52.65 |
97.586 |
0.514 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
48.921 |
95.862 |
0.469 |