Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NPS16_RS01580 Genome accession   NZ_CP101986
Coordinates   333207..334607 (+) Length   466 a.a.
NCBI ID   WP_002286623.1    Uniprot ID   -
Organism   Streptococcus mutans strain COCC33-14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 328207..339607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS16_RS01550 (NPS16_01550) - 328845..329381 (+) 537 WP_002277594.1 5-formyltetrahydrofolate cyclo-ligase -
  NPS16_RS01555 (NPS16_01555) - 329368..330039 (+) 672 WP_002286625.1 rhomboid family intramembrane serine protease -
  NPS16_RS01560 (NPS16_01560) galU 330061..330981 (-) 921 WP_002262524.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NPS16_RS01565 (NPS16_01565) - 330983..332002 (-) 1020 WP_002262523.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  NPS16_RS01570 (NPS16_01570) - 332326..332769 (+) 444 WP_258969049.1 dUTP diphosphatase -
  NPS16_RS01575 (NPS16_01575) - 332779..333249 (+) 471 WP_002270349.1 cysteine hydrolase family protein -
  NPS16_RS01580 (NPS16_01580) radA 333207..334607 (+) 1401 WP_002286623.1 DNA repair protein RadA Machinery gene
  NPS16_RS01585 (NPS16_01585) - 334697..335191 (+) 495 WP_002262519.1 carbonic anhydrase -
  NPS16_RS01590 (NPS16_01590) - 335380..336093 (+) 714 WP_002284443.1 TIGR00266 family protein -
  NPS16_RS01595 (NPS16_01595) gltX 336377..337834 (+) 1458 WP_002273528.1 glutamate--tRNA ligase -
  NPS16_RS01600 (NPS16_01600) - 337950..338474 (+) 525 WP_002268868.1 transcription repressor NadR -
  NPS16_RS01605 (NPS16_01605) - 338541..339089 (+) 549 WP_002262515.1 hypothetical protein -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 51125.63 Da        Isoelectric Point: 7.1359

>NTDB_id=713630 NPS16_RS01580 WP_002286623.1 333207..334607(+) (radA) [Streptococcus mutans strain COCC33-14]
MADCWNSNERRITIAKKKTTFVCQECGYNSPKYLGRCPNCSSWSSFVEEIEVAEVKNARVSLTGEKTRPVKLNQVTSSQA
TRVKTNMEEFNRVLGGGVVSGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVFYVSGEESAEQIKLRSERLGDIDNEFYLY
AETNMQSIRAEIEKIQPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE
HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEV
QALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQE
CYIGEIGLTGEIRRVNRIEQRLNEASKLGFTKIFVPKNSLSGLTIPQGIQVIGVTTVSEVLKKVFN

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=713630 NPS16_RS01580 WP_002286623.1 333207..334607(+) (radA) [Streptococcus mutans strain COCC33-14]
ATGGCAGATTGCTGGAATAGTAACGAAAGGAGAATTACCATAGCTAAGAAAAAAACAACTTTTGTCTGTCAAGAGTGCGG
CTATAATTCGCCCAAGTATCTGGGACGTTGTCCTAATTGCTCGTCTTGGTCTTCTTTTGTTGAAGAGATTGAAGTTGCTG
AGGTTAAAAATGCTCGCGTTTCACTGACAGGTGAGAAGACACGGCCAGTCAAGTTAAATCAGGTCACCTCCAGCCAAGCC
ACTAGAGTCAAGACCAATATGGAAGAATTCAACCGTGTTTTGGGCGGTGGTGTTGTATCAGGCAGTCTGGTTCTTATCGG
CGGCGATCCCGGCATCGGGAAATCGACCCTACTTTTGCAAGTTTCAACACAATTAGCCAATAAAGGAACTGTTTTTTATG
TTTCTGGTGAAGAATCAGCGGAGCAGATCAAGTTGCGTAGCGAGCGTCTCGGTGATATTGACAATGAGTTTTATCTCTAT
GCTGAAACTAATATGCAAAGTATTCGTGCTGAGATTGAAAAAATCCAGCCTGATTTTTTAATTATTGATTCTATTCAAAC
AGTGATGAGTCCTGAAATTTCCAGTGTTCAAGGTTCTGTTTCTCAGGTGCGTGAAGTGACAGCAGAATTAATGCAATTAG
CTAAAACCAATAACATTGCGACTTTTATTGTTGGACATGTGACTAAAGAAGGAACCTTAGCTGGACCGCGAATGTTAGAA
CACATGGTGGACACTGTGCTCTACTTTGAAGGCGAGCGGCAGCATACTTTTCGTATCTTACGAGCCGTTAAAAATCGCTT
TGGTTCTACTAATGAGATTGGTATTTTTGAAATGAGGTCGGGTGGTTTGGTTGAGGTTTTGAATCCCAGCCAAGTTTTTT
TAGAAGAGCGTCTAGATGGAGCAACAGGCTCAGCTATTGTTGTTACCATGGAAGGAACACGACCTATTTTAGCGGAAGTA
CAAGCCCTAGTAACACCAACTGTTTTTGGTAATGCTAAACGGACAACAACAGGACTGGACTTTAATCGTGTTAGTTTGAT
TATGGCGGTTTTGGAGAAGCGCTGCGGACTTTTATTGCAAAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTGCGCT
TAGATGAGCCTGCTATTGATTTAGCGGTTGCGGTAGCCATTGCTTCCAGTTATAAGGAAAAGCCAACCAACCCTCAAGAA
TGTTATATTGGTGAAATTGGTTTGACAGGTGAAATTCGTCGTGTTAATCGTATCGAACAACGTCTCAATGAAGCTAGTAA
GCTCGGTTTTACCAAGATTTTTGTACCCAAAAATTCCCTGTCAGGTTTAACGATTCCACAAGGTATTCAGGTAATTGGTG
TGACAACTGTTAGTGAAGTCTTAAAAAAGGTATTTAATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(375-438)

AAA domain (AAA_25)

(77-231)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(21-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.938

96.996

0.863
  radA Streptococcus pneumoniae D39

88.938

96.996

0.863
  radA Streptococcus pneumoniae R6

88.938

96.996

0.863
  radA Streptococcus pneumoniae TIGR4

88.938

96.996

0.863
  radA Streptococcus mitis SK321

88.938

96.996

0.863
  radA Streptococcus mitis NCTC 12261

88.717

96.996

0.861
  radA Bacillus subtilis subsp. subtilis str. 168

62.031

97.21

0.603