Detailed information NTG0712963

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: PNF29_RS01935
• Genome accession: NZ_CP116773
• Coordinates: 368838..369983 (-)
• Length: 381 a.a.
• NCBI ID: WP_095844025.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain SRCM125727
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 363838..374983

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PNF29_RS01910 (PNF29_01910)	pbpG	364097..366172 (-)	2076	WP_129093493.1	transglycosylase domain-containing protein	-
PNF29_RS01915 (PNF29_01915)	speE	366375..367205 (+)	831	WP_003227543.1	spermidine synthase	-
PNF29_RS01920 (PNF29_01920)	speB	367266..368138 (+)	873	WP_003227545.1	agmatinase	-
PNF29_RS01925 (PNF29_01925)	-	368170..368635 (-)	466	Protein_381	YbaK/EbsC family protein	-
PNF29_RS01930 (PNF29_01930)	-	368735..368854 (-)	120	WP_014665774.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
PNF29_RS01935 (PNF29_01935)	rapF	368838..369983 (-)	1146	WP_095844025.1	tetratricopeptide repeat protein	Regulator
PNF29_RS21815	-	369986..370216 (+)	231	WP_024572000.1	hypothetical protein	-
PNF29_RS01940 (PNF29_01940)	ywhK	370213..371568 (+)	1356	WP_095844024.1	YncE family protein	-
PNF29_RS01945 (PNF29_01945)	ywhL	371617..372984 (+)	1368	WP_017696256.1	YncE family protein	-
PNF29_RS01950 (PNF29_01950)	albG	372990..373691 (-)	702	WP_029318695.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
PNF29_RS01955 (PNF29_01955)	albF	373688..374968 (-)	1281	WP_129093491.1	M16 family metallopeptidase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45579.21 Da
• Isoelectric Point: 5.0684

>NTDB_id=712963 PNF29_RS01935 WP_095844025.1 368838..369983(-) (rapF) [Bacillus subtilis strain SRCM125727]
MSGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDRREYVLAIQFFKKAESKLVFVKDKIDKAEFFFKMSEVYYYMKQTYVS
MDYARQAFEIYSEQTTYDIRMIQCQSLFGANFLDLKQYEKAIAHFQKAFTLAKTEQQPQLMGRTLYNIALCKQNQNSFES
AIEYVKKSIQVFEGSKMLPSLPQAFFLITQIYFKLGKIDNACEYHKKGKEYSAAAGDTVYLTEFEFLESLYLSGPDEERI
EKCFVFLESKMMYADIEDFALDVAKYYHQQENYKKASHYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1146 bp

>NTDB_id=712963 PNF29_RS01935 WP_095844025.1 368838..369983(-) (rapF) [Bacillus subtilis strain SRCM125727]
GTGTCAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTAATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGATCGCCGTGAATATGTATTAGCCATTCAATTCTTTAAAAAAGCTGAGAGCAAGCTGGTTTTTG
TGAAAGATAAAATCGATAAAGCTGAATTCTTTTTCAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTCTCC
ATGGACTATGCACGTCAAGCATTCGAAATATACAGTGAACAGACTACATATGATATCAGAATGATTCAATGCCAGTCCTT
ATTCGGAGCCAACTTTTTGGATTTAAAACAATACGAAAAAGCAATTGCCCATTTTCAAAAAGCCTTTACACTTGCAAAAA
CAGAGCAGCAGCCCCAATTAATGGGAAGAACACTTTATAACATAGCACTCTGCAAGCAAAACCAAAACAGTTTTGAATCA
GCGATAGAGTATGTAAAAAAATCTATTCAAGTATTTGAAGGATCTAAAATGCTTCCTTCATTGCCACAAGCTTTTTTCCT
AATTACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCCTGTGAATATCATAAAAAAGGAAAAGAGTATTCTGCAG
CTGCGGGAGATACCGTGTATCTAACGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCGGATGAGGAACGGATA
GAAAAATGTTTTGTTTTTCTTGAAAGTAAAATGATGTATGCAGATATTGAGGACTTCGCACTTGATGTTGCTAAATATTA
TCATCAACAGGAAAATTACAAAAAAGCATCTCATTACTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGG
TGAATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_8) (263-290)

• Tetratricopeptide repeat (TPR_12) (189-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	79.79	100	0.798
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572