Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   PND17_RS07995 Genome accession   NZ_CP116772
Coordinates   1519061..1519651 (+) Length   196 a.a.
NCBI ID   WP_011680603.1    Uniprot ID   Q03MX8
Organism   Streptococcus thermophilus strain strain TSGB 4141     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1514061..1524651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PND17_RS10035 - 1515190..1515645 (-) 456 Protein_1552 DUF3021 domain-containing protein -
  PND17_RS07975 (PND17_07975) - 1515642..1516033 (-) 392 Protein_1553 LytTR family DNA-binding domain-containing protein -
  PND17_RS07980 (PND17_07980) - 1516257..1516562 (+) 306 WP_141327143.1 hypothetical protein -
  PND17_RS07985 (PND17_07985) hexB 1516614..1518557 (+) 1944 WP_011680601.1 DNA mismatch repair endonuclease MutL Machinery gene
  PND17_RS07990 (PND17_07990) - 1518687..1518908 (+) 222 WP_011680602.1 hypothetical protein -
  PND17_RS07995 (PND17_07995) ruvA 1519061..1519651 (+) 591 WP_011680603.1 Holliday junction branch migration protein RuvA Machinery gene
  PND17_RS08000 (PND17_08000) - 1519658..1520212 (+) 555 Protein_1558 DNA-3-methyladenine glycosylase I -
  PND17_RS08005 (PND17_08005) cinA 1520308..1521579 (+) 1272 WP_087009608.1 competence/damage-inducible protein A Machinery gene
  PND17_RS08010 (PND17_08010) recA 1521615..1522769 (+) 1155 WP_087009609.1 recombinase RecA Machinery gene
  PND17_RS08015 (PND17_08015) spx 1522946..1523344 (+) 399 WP_002949058.1 transcriptional regulator Spx -
  PND17_RS08020 (PND17_08020) - 1523704..1523895 (-) 192 WP_022096621.1 hypothetical protein -
  PND17_RS08025 (PND17_08025) - 1523974..1524585 (-) 612 WP_271298438.1 HNH endonuclease family protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21683.98 Da        Isoelectric Point: 5.2834

>NTDB_id=712939 PND17_RS07995 WP_011680603.1 1519061..1519651(+) (ruvA) [Streptococcus thermophilus strain strain TSGB 4141]
MYDYIKGTLVKITAKHIVIETNGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPAETTNTTANQTAGNQQLDEAMEALL
ALGYKATELKKVKAFFEDTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=712939 PND17_RS07995 WP_011680603.1 1519061..1519651(+) (ruvA) [Streptococcus thermophilus strain strain TSGB 4141]
ATGTATGATTATATCAAGGGCACCCTAGTAAAAATCACAGCCAAACACATTGTCATAGAAACAAATGGTCTAGGATATAT
TGTCACTGTGGCTAATCCCTACAGCTTTTCTGATCAAATGAATCAGACTATCCAAGTGTATCTTCATCAAGTTATTAGAG
ATGATGCCCACCTACTTTTTGGTTTTCATACTGAAGATGAGAAAGAAGTTTTTCTTAAGTTGATTTCTGTTTCTGGGATA
GGTCCGACGACTGCTCTAGCCATAGTGGCTGTGGATGATAATCAGGGACTTGTTGCTGCTATTGATAATAGTGACATCAA
ATACCTGATGAAATTTCCAAAGATTGGTAAAAAGACTGCTCAACAAATGGTTCTTGATCTGGCAGGAAAATTTGCAGAGT
TACCAGCAGAAACGACCAATACTACGGCAAATCAGACTGCAGGAAATCAACAGTTGGATGAAGCTATGGAAGCTTTGCTT
GCTCTTGGGTACAAAGCCACAGAGCTTAAGAAAGTGAAAGCCTTCTTTGAGGATACCAATGAAACGGCAGAGCAATATAT
TAAGTCCGCTCTTAAAATGTTGATGAAGTGA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q03MX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

66.5

100

0.679
  ruvA Streptococcus pneumoniae R6

66.5

100

0.679
  ruvA Streptococcus pneumoniae D39

66.5

100

0.679
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.647

100

0.444