Detailed information NTG0710800

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: NMH04_RS12960
• Genome accession: NZ_CP101609
• Coordinates: 2494614..2496998 (-)
• Length: 794 a.a.
• NCBI ID: WP_045034107.1
• Uniprot ID: -
• Organism: Bacillus altitudinis strain 47
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2489614..2501998

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NMH04_RS12925 (NMH04_12870)	-	2490717..2491445 (+)	729	WP_007501456.1	amino acid ABC transporter ATP-binding protein	-
NMH04_RS12930 (NMH04_12875)	-	2491460..2492269 (+)	810	WP_113767040.1	transporter substrate-binding domain-containing protein	-
NMH04_RS12935 (NMH04_12880)	-	2492350..2493003 (+)	654	WP_073413627.1	amino acid ABC transporter permease	-
NMH04_RS12940 (NMH04_12885)	-	2493019..2493669 (+)	651	WP_008342693.1	amino acid ABC transporter permease	-
NMH04_RS12945 (NMH04_12890)	-	2493708..2493839 (-)	132	WP_008342695.1	YrzQ family protein	-
NMH04_RS12950 (NMH04_12895)	-	2493860..2494051 (-)	192	WP_003216308.1	hypothetical protein	-
NMH04_RS12955 (NMH04_12900)	-	2494065..2494523 (-)	459	WP_041506817.1	PRC-barrel domain-containing protein	-
NMH04_RS12960 (NMH04_12905)	recD2	2494614..2496998 (-)	2385	WP_045034107.1	ATP-dependent RecD-like DNA helicase	Machinery gene
NMH04_RS12965 (NMH04_12910)	-	2497018..2497671 (-)	654	WP_045034108.1	tetratricopeptide repeat protein	-
NMH04_RS12970 (NMH04_12915)	mnmA	2497733..2498851 (-)	1119	WP_008342709.1	tRNA 2-thiouridine(34) synthase MnmA	-
NMH04_RS12975 (NMH04_12920)	-	2498947..2500089 (-)	1143	WP_041506813.1	cysteine desulfurase family protein	-
NMH04_RS12980 (NMH04_12925)	-	2500108..2500527 (-)	420	WP_008342713.1	cysteine metabolism transcriptional regulator CymR	-

Sequence

Protein

• Length: 794 a.a.
• Molecular weight: 88945.33 Da
• Isoelectric Point: 5.0173

>NTDB_id=710800 NMH04_RS12960 WP_045034107.1 2494614..2496998(-) (recD2) [Bacillus altitudinis strain 47]
MQEHPDQMKLEDEPFLKGTVQAVIFHNESNLYSVLKVKVIETSENLEEKTASVTGYFPALHEEETYTFYGKVTSHPKFGE
QFQATHFQKEVPTTKQGIIHYLSSDLFEGIGKKTAEEIVGKLGNQTLHQIMRDPSVLYDVPRLSKKKADKLAAALQEHQG
LEQIMISLNQYGFGPQLSMKIYQVYESETLQKIEENPYQLVKDVEGIGFIKADELGARTGISGNDPDRIRAALLYTVETA
SLQDGHTYIQTKDLIVETRKLLNQTGNDYKVTEMDVANQIIALGEGKDMIIEDERCYHPSLFYAEQSVAKRIQKIVAQTE
YADQFPESEFLLALGELEERLGVQYAPTQKEAIQKALMSPMLLLTGGPGTGKTTVIKGIVELYSDLHGVSLDPGDYKKDE
AFPFVLAAPTGRAAKRMTESTGLPAVTIHRLLGWNGSEGFSHDEDQPIEGKLVIIDESSMLDIWLANHLFKAIPDHIQVI
MVGDEHQLPSVGPGQVLRDLLASQAVPAVTLTDIYRQADGSTIVELAHDMKNGVLPKDITARSKDRSFIQCSSDQMKEVI
EKVVSNAAQKGYSAKDIQVLAPMYKGKAGINELNKMLQQILNPKKPKGREIPFGDVVYRTGDKVLQLVNQPENNIFNGDI
GEIVSIFYAKENTEKEDMAVISFDGNEITFTKKDFHQFTHAYCCSIHKSQGSEFPIVVLPVVRSYYRMLRRNLLYTAITR
SKKFLILCGEESALEWGVKNNEDSLRQTSLTMRLTETEEIMDAELAALQKELPFSVHDANIGMEGITPFDFMQE

Nucleotide

• Length: 2385 bp

>NTDB_id=710800 NMH04_RS12960 WP_045034107.1 2494614..2496998(-) (recD2) [Bacillus altitudinis strain 47]
GTGCAGGAACATCCAGATCAAATGAAGCTTGAAGATGAACCGTTTTTAAAAGGGACGGTTCAAGCCGTTATTTTCCATAA
CGAAAGTAATTTATACTCGGTGTTAAAAGTAAAAGTCATTGAAACATCAGAGAATTTAGAGGAAAAGACAGCATCTGTCA
CAGGGTACTTCCCAGCGCTTCATGAGGAGGAAACCTACACCTTCTATGGCAAGGTCACAAGTCATCCGAAGTTTGGCGAG
CAGTTTCAAGCCACTCATTTTCAAAAGGAAGTCCCTACAACAAAGCAAGGCATCATTCATTATCTCTCTAGTGACTTGTT
TGAAGGGATTGGAAAAAAGACGGCGGAAGAAATCGTCGGCAAGCTTGGCAATCAGACGCTTCATCAAATTATGCGTGATC
CGTCTGTGTTGTATGACGTCCCTCGCCTGTCAAAAAAGAAGGCAGATAAGCTGGCTGCCGCACTTCAGGAGCATCAGGGG
CTTGAGCAAATCATGATTAGCCTGAATCAATATGGTTTTGGTCCTCAGCTTAGCATGAAGATTTACCAAGTGTACGAGAG
TGAAACGTTGCAGAAAATTGAAGAAAACCCTTATCAGCTCGTCAAAGACGTAGAGGGGATTGGCTTTATTAAAGCAGATG
AACTCGGCGCTAGAACAGGGATATCTGGAAATGATCCAGACCGCATTCGTGCAGCCCTTTTGTATACCGTTGAGACAGCA
AGCCTGCAGGACGGTCATACATACATACAAACGAAAGATCTGATTGTCGAGACCCGTAAACTACTGAATCAAACAGGCAA
TGACTACAAAGTGACTGAAATGGACGTTGCCAATCAGATCATTGCACTTGGTGAAGGGAAAGACATGATTATTGAAGATG
AGCGCTGTTATCATCCGTCGCTCTTTTATGCGGAGCAAAGTGTGGCAAAACGCATTCAAAAAATTGTCGCTCAAACGGAA
TATGCAGATCAATTTCCTGAATCAGAATTTCTGCTTGCACTCGGTGAACTGGAGGAACGGCTTGGTGTCCAGTATGCACC
AACCCAAAAAGAAGCCATTCAAAAGGCACTCATGTCTCCAATGCTGCTTTTAACAGGCGGACCGGGTACAGGGAAAACGA
CGGTCATTAAAGGGATTGTCGAGCTTTACAGCGATCTTCACGGCGTATCTCTTGACCCGGGTGATTATAAAAAAGATGAA
GCATTTCCGTTCGTGCTTGCCGCACCAACTGGACGTGCTGCGAAACGAATGACAGAATCCACTGGACTTCCTGCTGTGAC
CATTCACCGGCTGCTAGGCTGGAATGGATCAGAAGGCTTCTCACATGATGAAGACCAGCCGATTGAAGGGAAGCTTGTCA
TCATTGATGAATCGAGTATGCTGGATATTTGGCTTGCGAACCATTTGTTTAAGGCGATCCCAGATCATATTCAAGTCATT
ATGGTTGGAGACGAACATCAACTTCCATCTGTCGGACCTGGTCAAGTGTTAAGAGACCTGCTTGCGTCACAAGCTGTACC
GGCAGTTACACTAACTGATATTTACCGGCAGGCAGACGGTTCAACAATTGTTGAGCTTGCGCATGATATGAAAAATGGTG
TATTGCCAAAGGATATTACTGCACGCTCGAAGGATCGATCCTTTATTCAATGCTCTAGTGACCAAATGAAAGAAGTTATC
GAGAAAGTGGTCAGCAATGCTGCGCAAAAGGGTTATTCAGCAAAGGACATTCAAGTGCTTGCCCCGATGTATAAAGGAAA
AGCAGGCATTAATGAACTGAATAAAATGCTTCAGCAAATTTTGAATCCTAAAAAGCCAAAAGGAAGAGAAATTCCTTTTG
GTGATGTCGTCTACCGGACAGGTGATAAGGTACTTCAGCTTGTCAATCAGCCGGAGAATAACATTTTTAATGGAGATATT
GGCGAAATTGTCTCGATCTTTTATGCGAAAGAAAACACGGAAAAAGAAGATATGGCGGTCATCTCCTTTGATGGAAACGA
AATCACGTTTACGAAAAAAGATTTTCATCAATTTACACACGCTTATTGTTGCTCGATTCATAAATCCCAGGGCAGTGAAT
TCCCAATCGTGGTGCTGCCAGTCGTGAGAAGTTATTATCGAATGCTTCGAAGAAATTTGCTCTACACGGCCATTACACGA
AGTAAAAAGTTTTTAATTTTGTGCGGTGAGGAATCAGCATTAGAGTGGGGCGTGAAAAATAATGAAGACTCCCTCAGACA
AACGTCTTTAACCATGCGTCTTACTGAAACGGAAGAAATCATGGACGCTGAGCTAGCAGCTCTCCAAAAAGAACTTCCTT
TCAGCGTACATGATGCCAATATTGGCATGGAGGGAATCACCCCGTTTGATTTTATGCAAGAGTAA

Domains

Predicted by InterproScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-728)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (593-659)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-248)

• AAA domain (AAA_30) (345-553)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	79.874	100	0.8