Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NMD06_RS24220 Genome accession   NZ_CP101082
Coordinates   4932856..4933380 (-) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter braakii strain OT129     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4927856..4938380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD06_RS24200 (NMD06_24170) soxR 4929499..4929957 (-) 459 WP_114683851.1 redox-sensitive transcriptional activator SoxR -
  NMD06_RS24205 (NMD06_24175) soxS 4930044..4930367 (+) 324 WP_114683850.1 superoxide response transcriptional regulator SoxS -
  NMD06_RS24210 (NMD06_24180) - 4930370..4931956 (-) 1587 WP_370604402.1 EAL domain-containing protein -
  NMD06_RS24215 (NMD06_24185) - 4932508..4932789 (+) 282 WP_370604403.1 YjcB family protein -
  NMD06_RS24220 (NMD06_24190) ssb 4932856..4933380 (-) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NMD06_RS24225 (NMD06_24195) uvrA 4933632..4936454 (+) 2823 WP_370604404.1 excinuclease ABC subunit UvrA -
  NMD06_RS24230 (NMD06_24200) - 4936550..4936906 (-) 357 WP_016155357.1 MmcQ/YjbR family DNA-binding protein -
  NMD06_RS24235 (NMD06_24205) aphA 4937034..4937747 (-) 714 WP_114683847.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=708560 NMD06_RS24220 WP_003826621.1 4932856..4933380(-) (ssb) [Citrobacter braakii strain OT129]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=708560 NMD06_RS24220 WP_003826621.1 4932856..4933380(-) (ssb) [Citrobacter braakii strain OT129]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTTGTGCTGTTCGGCAAACTGGCGGAAGTTGCCAGTGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGCGTAGAAAAGTACACCACTGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGTGGTGGTGCTCCGGCAGGTGGCGGCCAGCAGCAGGGGGGTTGGGGTC
AGCCTCAGCAGCCGCAAGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCAGCTCCGGCAGCGCCA
TCTAATGAGCCACCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5