Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   PF977_RS20300 Genome accession   NZ_CP116012
Coordinates   3831520..3831954 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain SRCM124333     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3826520..3836954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF977_RS20285 (PF977_20285) epsK 3827149..3828000 (-) 852 WP_003234384.1 cyclic-di-GMP receptor EpsK -
  PF977_RS20290 (PF977_20290) ephJ 3827981..3829069 (-) 1089 WP_015715260.1 hypothetical protein -
  PF977_RS20295 (PF977_20295) topB 3829272..3831455 (-) 2184 WP_015715259.1 DNA topoisomerase III -
  PF977_RS20300 (PF977_20300) lrpC 3831520..3831954 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  PF977_RS20305 (PF977_20305) ydzA 3832139..3832429 (+) 291 WP_015252794.1 DUF3817 domain-containing protein -
  PF977_RS20310 (PF977_20310) amj 3832474..3833283 (-) 810 WP_015715258.1 lipid II flippase Amj -
  PF977_RS20315 (PF977_20315) ydaG 3833789..3834211 (-) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  PF977_RS20320 (PF977_20320) ydaF 3834289..3834840 (-) 552 WP_015715257.1 GNAT family N-acetyltransferase -
  PF977_RS20325 (PF977_20325) lyxE 3834927..3835430 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  PF977_RS20330 (PF977_20330) ydaD 3835446..3836306 (-) 861 WP_003246648.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=706957 PF977_RS20300 WP_003246585.1 3831520..3831954(-) (lrpC) [Bacillus subtilis strain SRCM124333]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=706957 PF977_RS20300 WP_003246585.1 3831520..3831954(-) (lrpC) [Bacillus subtilis strain SRCM124333]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGGCAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTAGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1