Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   PF977_RS16305 Genome accession   NZ_CP116012
Coordinates   3088007..3088924 (-) Length   305 a.a.
NCBI ID   WP_015715665.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM124333     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3083007..3093924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF977_RS16280 (PF977_16280) spx 3083363..3083758 (-) 396 WP_014476435.1 transcriptional regulator Spx -
  PF977_RS16285 (PF977_16285) yjbC 3083939..3084517 (-) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  PF977_RS16290 (PF977_16290) yjbB 3084682..3085899 (-) 1218 WP_074794275.1 MFS transporter -
  PF977_RS16295 (PF977_16295) oppF 3086007..3086924 (-) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  PF977_RS16300 (PF977_16300) oppD 3086926..3088002 (-) 1077 WP_074794192.1 oligopeptide ABC transporter ATP-binding protein OppD -
  PF977_RS16305 (PF977_16305) amiD 3088007..3088924 (-) 918 WP_015715665.1 oligopeptide ABC transporter permease OppC Regulator
  PF977_RS16310 (PF977_16310) oppB 3088928..3089863 (-) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  PF977_RS16315 (PF977_16315) oppA 3089971..3091608 (-) 1638 WP_003232957.1 oligopeptide ABC transporter substrate-binding protein OppA -
  PF977_RS16320 (PF977_16320) trpS 3092352..3093344 (+) 993 WP_015483084.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33607.10 Da        Isoelectric Point: 10.2873

>NTDB_id=706933 PF977_RS16305 WP_015715665.1 3088007..3088924(-) (amiD) [Bacillus subtilis strain SRCM124333]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICVTMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=706933 PF977_RS16305 WP_015715665.1 3088007..3088924(-) (amiD) [Bacillus subtilis strain SRCM124333]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCCGCTGTTCTTGATTTGCTGATCGGTGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGAA
GAACAGATGAAATCATGATGCGTATCGCTGACATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGGCTATTTACGATTATTATTGCCATGACGATTACGGGCTGGATTAACATGGCCAGAATCGTGCGTGG
ACAAGTGCTGCAGCTGAAGAATCAAGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTGCTTTTTA
AACATATCGTGCCAAACGCAATGGGTTCCATTTTGGTCACGATGACATTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTCGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCGTTACAATGTTTGGCTTTAACGTTGTCGGCGACG
GATTAAGAGATGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364