Detailed information NTG0706746

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: PF976_RS08485
• Genome accession: NZ_CP116011
• Coordinates: 1608058..1609194 (-)
• Length: 378 a.a.
• NCBI ID: WP_147785874.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain SRCM124317
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1603058..1614194

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PF976_RS08450 (PF976_08450)	-	1603859..1604317 (+)	459	WP_013352370.1	SMI1/KNR4 family protein	-
PF976_RS08455 (PF976_08455)	-	1604623..1604712 (-)	90	WP_076982784.1	putative holin-like toxin	-
PF976_RS08460 (PF976_08460)	-	1604955..1605158 (+)	204	WP_021493638.1	hypothetical protein	-
PF976_RS08465 (PF976_08465)	yunB	1605285..1606058 (+)	774	WP_147785872.1	sporulation protein YunB	-
PF976_RS08470 (PF976_08470)	-	1606277..1606609 (+)	333	WP_014470072.1	YolD-like family protein	-
PF976_RS08475 (PF976_08475)	-	1606602..1607852 (+)	1251	WP_147785873.1	DNA polymerase thumb domain-containing protein	-
PF976_RS08480 (PF976_08480)	-	1607886..1608068 (-)	183	WP_061573900.1	hypothetical protein	-
PF976_RS08485 (PF976_08485)	rapF	1608058..1609194 (-)	1137	WP_147785874.1	Rap family tetratricopeptide repeat protein	Regulator
PF976_RS08490 (PF976_08490)	-	1609337..1609642 (-)	306	WP_261798859.1	collagen-like protein	-
PF976_RS08495 (PF976_08495)	-	1609980..1610231 (-)	252	WP_094246744.1	phage holin	-
PF976_RS08500 (PF976_08500)	-	1610252..1610644 (-)	393	WP_061573903.1	hypothetical protein	-
PF976_RS08505 (PF976_08505)	-	1610760..1611806 (-)	1047	WP_147785876.1	N-acetylmuramoyl-L-alanine amidase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 44621.09 Da
• Isoelectric Point: 4.8966

>NTDB_id=706746 PF976_RS08485 WP_147785874.1 1608058..1609194(-) (rapF) [Bacillus amyloliquefaciens strain SRCM124317]
MEQLISSSKVGLKINEWYKYIRLFSVADAEILRDEVEQEIEYNEEDQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPKIS
DLLEKIESKQSNLKGILEYYFNFFHGMYEFEQYEYLRAISFYNRAEKKISIVPDEIERAEFHYKIAEVYYHMKQTHMSMH
HIVQAIETYKAHETYSIRVIQCSFVIGLNYLDMEYPEKAIPHFMNALKQAQEINMPRLIGSSLYNLGLCSFATGNMEKAL
EYFKEGATTYQSNSLHNSSRLLDILLMLAKTHFKLSNSVDGKQVCEQGLMLSKDLNDDVLGKMFDFLMALFVENDKDRLF
KILDYLESKAMLSDVEDLATDAAMYYNVNEDHKVATTFYEKVLYARKQIQRGDCLYEI

Nucleotide

• Length: 1137 bp

>NTDB_id=706746 PF976_RS08485 WP_147785874.1 1608058..1609194(-) (rapF) [Bacillus amyloliquefaciens strain SRCM124317]
TTGGAGCAATTGATCTCTTCTTCAAAAGTTGGCTTAAAAATCAATGAATGGTACAAGTACATAAGATTATTCAGTGTAGC
AGATGCAGAAATTCTAAGGGATGAAGTTGAACAAGAAATAGAATATAATGAAGAAGATCAAGATTTATTGTTGTACTATT
CGCTCATGTGTTTTCGACATCAGTTAATGCTTGATTATCTTGAACCGAAAACCATGAATGAAGAACGACCTAAAATTTCA
GACTTGTTAGAAAAGATCGAAAGTAAGCAAAGCAATTTAAAAGGAATTCTTGAATATTATTTTAACTTTTTTCATGGGAT
GTATGAATTTGAACAGTACGAATATCTTAGAGCAATAAGTTTTTACAACCGAGCAGAAAAGAAGATATCTATTGTCCCCG
ATGAAATAGAGCGAGCTGAATTTCATTATAAAATTGCTGAAGTGTATTATCACATGAAGCAAACTCACATGTCTATGCAC
CATATTGTTCAAGCGATAGAAACCTACAAAGCGCACGAGACATACTCAATAAGAGTAATTCAATGTTCGTTTGTCATCGG
TCTTAATTATTTAGACATGGAATATCCAGAAAAAGCAATACCGCATTTTATGAATGCATTAAAACAAGCACAAGAGATTA
ATATGCCTCGGTTAATAGGCTCTTCTTTGTATAATCTCGGTTTATGCTCATTCGCAACAGGAAATATGGAGAAGGCTTTA
GAGTATTTTAAAGAAGGGGCTACAACTTACCAAAGTAATTCTCTTCACAATTCTAGCCGACTGCTAGACATTCTTTTAAT
GTTGGCCAAAACACACTTTAAATTATCCAACTCTGTTGATGGGAAACAGGTTTGTGAACAAGGTCTTATGCTGTCTAAAG
ATTTGAACGATGACGTATTAGGAAAAATGTTTGATTTTCTTATGGCTCTATTCGTTGAGAATGATAAAGACCGACTTTTT
AAAATTTTAGATTACTTAGAATCAAAAGCTATGCTTTCAGACGTCGAAGACCTAGCGACTGATGCAGCAATGTATTATAA
TGTAAATGAAGACCATAAAGTAGCTACTACCTTTTATGAGAAAGTGCTTTATGCCCGAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_8) (222-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	45.144	100	0.455
rapC	Bacillus subtilis subsp. subtilis str. 168	44.444	100	0.444