Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NLW79_RS00580 Genome accession   NZ_CP100651
Coordinates   105582..106958 (+) Length   458 a.a.
NCBI ID   WP_254517990.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MEC_B334     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 100582..111958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLW79_RS00560 (NLW79_00560) ctsR 100935..101399 (+) 465 WP_010332747.1 transcriptional regulator CtsR -
  NLW79_RS00565 (NLW79_00565) - 101413..101970 (+) 558 WP_095714843.1 UvrB/UvrC motif-containing protein -
  NLW79_RS00570 (NLW79_00570) - 101970..103061 (+) 1092 WP_106021668.1 protein arginine kinase -
  NLW79_RS00575 (NLW79_00575) clpC 103058..105490 (+) 2433 WP_010332750.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  NLW79_RS00580 (NLW79_00580) radA 105582..106958 (+) 1377 WP_254517990.1 DNA repair protein RadA Machinery gene
  NLW79_RS00585 (NLW79_00585) disA 106962..108044 (+) 1083 WP_003242042.1 DNA integrity scanning diadenylate cyclase DisA -
  NLW79_RS00590 (NLW79_00590) - 108164..109264 (+) 1101 WP_059291688.1 PIN/TRAM domain-containing protein -
  NLW79_RS00595 (NLW79_00595) ispD 109279..109977 (+) 699 WP_254517991.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  NLW79_RS00600 (NLW79_00600) ispF 109970..110446 (+) 477 WP_198097889.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49544.12 Da        Isoelectric Point: 8.2443

>NTDB_id=705972 NLW79_RS00580 WP_254517990.1 105582..106958(+) (radA) [Bacillus halotolerans strain MEC_B334]
MAKTKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQIVQKPSPITSIETSEEPRVKTQLGEF
NRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLSGSTRHVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYIS
SAIEEMNPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGSAGSSITASMEGTRPILVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDTPPNPADCFIGEVGLT
GEVRRVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKPKGIEVIGVANVAEALRTSLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=705972 NLW79_RS00580 WP_254517990.1 105582..106958(+) (radA) [Bacillus halotolerans strain MEC_B334]
ATGGCTAAAACAAAATCCAAATTCATCTGCCAATCCTGCGGCTACGAGTCTCCAAAATGGATGGGGAAATGTCCGGGCTG
CGGTGCTTGGAATACAATGGTGGAAGAAATGATTAAAAAAGCACCGGCCAATCGGAGAGCGGCTTTTTCTCATTCTGTTC
AAATCGTACAGAAACCTTCCCCCATAACATCAATCGAAACATCAGAAGAACCCCGGGTTAAAACACAGCTCGGCGAGTTT
AACAGAGTGCTCGGCGGCGGTGTGGTGAAGGGCTCACTTGTTTTAATTGGCGGGGACCCCGGCATCGGAAAATCGACCTT
ATTACTGCAAGTATCCGCTCAGTTATCTGGTTCAACACGTCATGTTCTGTACATTTCAGGAGAAGAATCGGTAAAACAAA
CGAAATTAAGAGCAGACCGTCTGGGCATAAATAATCCCTCACTGCATGTTTTATCCGAAACCGATATGGAGTATATTTCG
TCTGCTATAGAAGAGATGAATCCAGCGTTTGTGGTTGTTGACTCTATTCAAACGGTCTATCAAAGCGATATTACATCGGC
TCCCGGCAGTGTGTCACAGGTAAGAGAATGTACAGCCGAGCTGATGAAAATTGCAAAGACAAAAGGTATTCCGATATTTA
TTGTAGGTCACGTAACGAAAGAAGGATCCATCGCGGGGCCGAGACTGCTGGAGCATATGGTTGACACTGTTTTATACTTT
GAAGGAGAACGTCACCATACTTTCCGAATCTTACGGGCTGTAAAAAACCGCTTTGGTTCTACAAACGAAATGGGTATTTT
TGAAATGCGGGAAGAAGGGCTCACTGAGGTACTGAATCCTTCAGAGATCTTCTTAGAAGAGCGTTCGGCGGGATCTGCGG
GGTCGAGCATAACGGCTTCTATGGAAGGTACAAGACCGATTCTTGTTGAAATTCAGGCGCTCATCTCGCCAACAAGCTTT
GGCAATCCGCGGCGCATGGCAACAGGGATAGATCATAACAGGGTGTCACTGTTAATGGCTGTGTTAGAAAAAAGAGTAGG
GCTGCTGCTGCAAAATCAGGATGCATATTTGAAGGTAGCGGGCGGCGTCAAACTTGATGAACCTGCGATTGATCTTGCTA
TAGCGGTCAGTATCGCATCAAGCTTTAGAGACACACCTCCAAATCCTGCAGATTGCTTTATAGGAGAAGTGGGATTAACC
GGAGAAGTCCGCCGGGTATCAAGAATTGAACAGCGTGTAAAAGAAGCGGCAAAGCTTGGTTTTAAACGCATGATCATACC
TGCGGCAAATCTGGATGGATGGACGAAACCAAAAGGGATTGAGGTCATCGGAGTAGCAAATGTTGCAGAGGCACTTCGTA
CTTCATTAGGAGGATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)

AAA domain (AAA_25)

(72-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

98.253

100

0.983
  radA Streptococcus pneumoniae Rx1

63.797

98.908

0.631
  radA Streptococcus pneumoniae D39

63.797

98.908

0.631
  radA Streptococcus pneumoniae R6

63.797

98.908

0.631
  radA Streptococcus pneumoniae TIGR4

63.797

98.908

0.631
  radA Streptococcus mitis NCTC 12261

63.797

98.908

0.631
  radA Streptococcus mitis SK321

63.576

98.908

0.629