Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   OSK17_RS02385 Genome accession   NZ_CP115738
Coordinates   467549..467983 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain W7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 462549..472983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSK17_RS02355 (OSK17_02355) ydaD 463197..464057 (+) 861 WP_003234401.1 SDR family oxidoreductase -
  OSK17_RS02360 (OSK17_02360) lyxE 464073..464576 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  OSK17_RS02365 (OSK17_02365) ydaF 464664..465215 (+) 552 WP_041850710.1 GNAT family N-acetyltransferase -
  OSK17_RS02370 (OSK17_02370) ydaG 465293..465715 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  OSK17_RS02375 (OSK17_02375) amj 466221..467030 (+) 810 WP_003234394.1 lipid II flippase Amj -
  OSK17_RS02380 (OSK17_02380) ydzA 467074..467364 (-) 291 WP_003246602.1 DUF3817 domain-containing protein -
  OSK17_RS02385 (OSK17_02385) lrpC 467549..467983 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  OSK17_RS02390 (OSK17_02390) topB 468048..470231 (+) 2184 WP_003246684.1 DNA topoisomerase III -
  OSK17_RS02395 (OSK17_02395) ephJ 470434..471522 (+) 1089 WP_003246551.1 lipoprotein -
  OSK17_RS02400 (OSK17_02400) epsK 471503..472354 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=705871 OSK17_RS02385 WP_003246585.1 467549..467983(+) (lrpC) [Bacillus subtilis strain W7]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=705871 OSK17_RS02385 WP_003246585.1 467549..467983(+) (lrpC) [Bacillus subtilis strain W7]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1