Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   PDI73_RS09410 Genome accession   NZ_CP115479
Coordinates   1943939..1944532 (-) Length   197 a.a.
NCBI ID   WP_003131995.1    Uniprot ID   Q9CDL2
Organism   Lactococcus lactis strain EP2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1938939..1949532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI73_RS09380 (PDI73_09380) - 1939432..1939878 (-) 447 WP_058219796.1 hypothetical protein -
  PDI73_RS09385 (PDI73_09385) - 1940096..1940296 (+) 201 WP_058219795.1 hypothetical protein -
  PDI73_RS09390 (PDI73_09390) glnA 1940357..1941697 (-) 1341 WP_003131984.1 type I glutamate--ammonia ligase -
  PDI73_RS09395 (PDI73_09395) - 1941759..1942124 (-) 366 WP_003131985.1 MerR family transcriptional regulator -
  PDI73_RS09400 (PDI73_09400) - 1942225..1942662 (-) 438 WP_058219793.1 low molecular weight protein-tyrosine-phosphatase -
  PDI73_RS09405 (PDI73_09405) ruvB 1942811..1943812 (-) 1002 WP_003131994.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  PDI73_RS09410 (PDI73_09410) ruvA 1943939..1944532 (-) 594 WP_003131995.1 Holliday junction branch migration protein RuvA Machinery gene
  PDI73_RS09415 (PDI73_09415) hexB 1944642..1946612 (-) 1971 WP_012898699.1 DNA mismatch repair endonuclease MutL Machinery gene
  PDI73_RS09420 (PDI73_09420) - 1946741..1947451 (-) 711 WP_033899281.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21166.73 Da        Isoelectric Point: 5.8174

>NTDB_id=704835 PDI73_RS09410 WP_003131995.1 1943939..1944532(-) (ruvA) [Lactococcus lactis strain EP2]
MFEYLNGKLVKISPTNIVIDVAGIGYLISVANPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLISVSGI
GPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATGTVGISLLDAGPAGNLALEEAIEALQ
ALGYKATELKKIEKKLAQETGLTSEEYIKSALKLMMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=704835 PDI73_RS09410 WP_003131995.1 1943939..1944532(-) (ruvA) [Lactococcus lactis strain EP2]
ATGTTTGAATATCTTAATGGAAAATTAGTAAAAATTTCCCCAACAAATATTGTAATTGATGTAGCAGGAATTGGCTATCT
TATCAGTGTAGCTAACCCTTACGCTTGGTCGGCTTTGATGAACACAGAAGTAAAAATTTATGTTCATCAAGTCATTCGCG
AAGATGCGCACAGTCTCTATGGTTTTGTTAACGAGGCCGAAAAAGCTTTATTCTTACGTCTGATCAGTGTTTCTGGGATT
GGGCCAAAATCAGCTCTGGCCATCATTGCGGCGGCTGATAACGAAGGTTTAATCACTGCTATTGACAATAGTGATATCAA
GTATTTAACTAAATTTCCAGGAGTTGGTAAAAAAACAGCCATGCAGATGGTGCTTGATTTGGCTGGGAAATTTGATGCGA
CAGGAACTGTAGGTATTTCTCTTCTTGATGCTGGACCTGCTGGCAATCTTGCTTTGGAAGAAGCGATTGAAGCGCTGCAA
GCTTTGGGTTATAAAGCAACAGAATTGAAGAAAATTGAGAAAAAATTAGCTCAAGAAACAGGTCTGACCAGCGAAGAATA
TATCAAATCAGCCTTAAAACTTATGATGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-196)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CDL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

60.101

100

0.604
  ruvA Streptococcus pneumoniae R6

60.101

100

0.604
  ruvA Streptococcus pneumoniae D39

60.101

100

0.604
  ruvA Bacillus subtilis subsp. subtilis str. 168

44.828

100

0.462