Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   H7675_RS02995 Genome accession   NZ_AP023389
Coordinates   571638..572303 (+) Length   221 a.a.
NCBI ID   WP_184004883.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain KUN-0012590     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 566638..577303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7675_RS02970 (KUN2590_05350) - 566790..568190 (+) 1401 WP_031488509.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  H7675_RS02975 (KUN2590_05360) - 568190..568567 (+) 378 WP_002983674.1 S1 RNA-binding domain-containing protein -
  H7675_RS02980 (KUN2590_05370) cysK 568585..569526 (-) 942 WP_031488510.1 cysteine synthase A -
  H7675_RS02985 (KUN2590_05380) - 569654..570286 (-) 633 WP_002983676.1 YigZ family protein -
  H7675_RS02990 (KUN2590_05390) comFA/cflA 570341..571666 (+) 1326 WP_111674976.1 DEAD/DEAH box helicase Machinery gene
  H7675_RS02995 (KUN2590_05400) comFC/cflB 571638..572303 (+) 666 WP_184004883.1 ComF family protein Machinery gene
  H7675_RS03000 (KUN2590_05410) hpf 572383..572931 (+) 549 WP_031488513.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25181.43 Da        Isoelectric Point: 9.3380

>NTDB_id=70454 H7675_RS02995 WP_184004883.1 571638..572303(+) (comFC/cflB) [Streptococcus pyogenes strain KUN-0012590]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACQDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKSYIPVPVPVSLGCFRERQFNQVSAILEAANVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=70454 H7675_RS02995 WP_184004883.1 571638..572303(+) (comFC/cflB) [Streptococcus pyogenes strain KUN-0012590]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCAAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATCACCAAGTACTATAAAAGCTATATCCCAGTCCCGGTTCCTGTAAGTCTCGGTTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae D39

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae R6

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae TIGR4

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412