Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NGM44_RS09960 Genome accession   NZ_CP099960
Coordinates   2143549..2144490 (+) Length   313 a.a.
NCBI ID   WP_253223504.1    Uniprot ID   -
Organism   Moraxella sp. FZFQ2102     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2138549..2149490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGM44_RS09940 (NGM44_09940) - 2139409..2140155 (-) 747 WP_253223500.1 S24 family peptidase -
  NGM44_RS09945 (NGM44_09945) - 2140312..2140533 (+) 222 WP_253223501.1 Cro/CI family transcriptional regulator -
  NGM44_RS09950 (NGM44_09950) - 2140536..2141177 (+) 642 WP_253223502.1 DNA-primase RepB domain-containing protein -
  NGM44_RS09955 (NGM44_09955) - 2141279..2143399 (+) 2121 WP_253223503.1 PhoX family phosphatase -
  NGM44_RS09960 (NGM44_09960) pilA 2143549..2144490 (+) 942 WP_253223504.1 signal recognition particle-docking protein FtsY Machinery gene
  NGM44_RS09965 (NGM44_09965) - 2144549..2145097 (+) 549 WP_253223505.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  NGM44_RS09970 (NGM44_09970) - 2145237..2146265 (+) 1029 WP_253223506.1 quinone-dependent dihydroorotate dehydrogenase -
  NGM44_RS09975 (NGM44_09975) - 2146278..2146787 (+) 510 WP_253223507.1 CvpA family protein -
  NGM44_RS09980 (NGM44_09980) purF 2146881..2148410 (+) 1530 WP_253223508.1 amidophosphoribosyltransferase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 33821.65 Da        Isoelectric Point: 5.0007

>NTDB_id=702983 NGM44_RS09960 WP_253223504.1 2143549..2144490(+) (pilA) [Moraxella sp. FZFQ2102]
MSENEQGGWFARMKAGLAKSSKNLSEGLVNVLVGGKEIDDELLEEVEDQLLVADIGVNATNRIIKNLTEQTARGDLIYSH
SLYKALKSELHDILAPKVHPLEIDTEKKPYVILMVGVNGVGKTTTIGKLAKRLQKQGKSVMLAAGDTFRAAATEQLQIWG
ERNGIPVIAQGHGSDSASVIFDAMQSARAKGIDVLIADTAGRLQNKSHLMQELEKVVRVMKKADETAPHETMIVLDAGTG
QNAINQVQVFSEAVNITGISITKLDGTAKGGVVFNIAQNTDIPIRFIGVGEGIDDLQPFEPKEFVDALLEKDE

Nucleotide


Download         Length: 942 bp        

>NTDB_id=702983 NGM44_RS09960 WP_253223504.1 2143549..2144490(+) (pilA) [Moraxella sp. FZFQ2102]
ATGAGCGAAAACGAACAAGGCGGCTGGTTTGCTCGCATGAAAGCAGGGCTTGCTAAGTCGAGCAAAAATCTGTCCGAAGG
CTTGGTGAATGTACTGGTCGGTGGTAAAGAGATTGATGATGAGCTGTTAGAAGAAGTTGAAGATCAGCTTTTGGTGGCTG
ACATCGGAGTCAATGCCACCAATCGCATTATTAAGAATCTGACCGAGCAGACCGCGCGCGGTGATTTGATTTATTCGCAT
TCGCTGTACAAGGCGCTAAAGTCTGAATTACACGATATTCTTGCGCCTAAGGTGCATCCGCTTGAGATTGACACCGAGAA
GAAGCCTTATGTAATCTTGATGGTTGGTGTCAATGGCGTGGGCAAAACCACCACCATCGGTAAGCTTGCCAAGCGCCTAC
AAAAACAAGGCAAATCAGTCATGCTGGCAGCGGGCGATACTTTCCGTGCTGCTGCGACTGAGCAGCTGCAGATTTGGGGT
GAGCGAAACGGCATTCCTGTCATCGCCCAAGGCCATGGTTCGGACAGTGCGTCGGTGATTTTTGATGCCATGCAATCGGC
ACGCGCCAAGGGTATTGATGTCTTGATCGCTGATACCGCAGGGCGCTTGCAGAACAAATCGCATCTGATGCAAGAGCTTG
AAAAAGTCGTGCGCGTGATGAAAAAAGCCGATGAGACTGCGCCACATGAGACGATGATCGTGCTGGACGCTGGCACGGGT
CAAAACGCCATCAATCAAGTGCAGGTATTCTCTGAAGCGGTGAATATCACAGGCATCAGCATCACCAAGCTTGATGGCAC
AGCCAAAGGCGGCGTGGTGTTTAACATCGCTCAAAATACCGATATCCCAATCCGCTTTATTGGCGTGGGCGAAGGCATTG
ATGACTTGCAGCCATTTGAACCCAAAGAATTTGTCGATGCACTGCTAGAAAAAGATGAATAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(110-309)

SRP54-type protein, helical bundle domain (SRP54_N)

(25-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.427

98.722

0.518