Detailed information NTG0702727

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: NI380_RS03420
• Genome accession: NZ_CP099934
• Coordinates: 712965..716351 (-)
• Length: 1128 a.a.
• NCBI ID: WP_005461251.1
• Uniprot ID: Q87LY0
• Organism: Vibrio parahaemolyticus strain BM26A
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 707965..721351

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI380_RS03405 (NI380_03400)	-	708203..709228 (-)	1026	WP_005461261.1	ABC transporter permease	-
NI380_RS03410 (NI380_03405)	-	709231..710217 (-)	987	WP_005461259.1	ABC transporter permease	-
NI380_RS03415 (NI380_03410)	-	710388..712070 (-)	1683	WP_005461274.1	ABC transporter substrate-binding protein	-
NI380_RS03420 (NI380_03415)	chiS	712965..716351 (-)	3387	WP_005461251.1	response regulator	Regulator
NI380_RS03425 (NI380_03420)	rsmC	716578..717603 (-)	1026	WP_025610948.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
NI380_RS03430 (NI380_03425)	-	717690..718775 (-)	1086	WP_005461253.1	AI-2E family transporter	-
NI380_RS03435 (NI380_03430)	hemL	719113..720408 (-)	1296	WP_005488434.1	glutamate-1-semialdehyde 2,1-aminomutase	-
NI380_RS03440 (NI380_03435)	erpA	720656..720997 (+)	342	WP_005461279.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127348.05 Da
• Isoelectric Point: 5.4383

>NTDB_id=702727 NI380_RS03420 WP_005461251.1 712965..716351(-) (chiS) [Vibrio parahaemolyticus strain BM26A]
MFKFYKKQKFKRLQSTLMTAFLVLSITPLTITAIFFLQSHSKDLQEQSTSHLLSVRDTKQQQILDYFEAQETEVMGFVRS
ELAYASGGRFYGLVNAFSRLGNDIEEARENAQQRYIEGSGDQIKTSILPESSNYVGSERYRLLHKRYHWAYLELLKRSDF
NDILLVDINGNVTYSINKDDNYGTNLLTGRYKDSALGKTFKRLADDVNERRKVNEDYTPVIISDFELEHGRQVAWLGAPI
VQQGYLHSYAMFRLPNNGITKLIADKNRESSINTLLVGSDQQPRTINTKQDSIQNSLEVIDKALAGQTDVGTYTNGLGEE
IIAAFAPIQTRGITWALVVQLPEKEAFSRIHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TTFNTERKDEIGRLAISFERMQRSIREKIQTIKQQNEELESNIKLIQKQNDELQLADKLKDEFLATTSHELRTPLHGMVG
IAETLVSGANGVIPASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSNHLLGNKTIRI
INQVPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATIVDDHVRVQVVDTGQGIPAEHLEHIFEPLIQAGQDAS
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLASEEEIQATQTLVARGHFQIPEINLENGDDLSLPENPD
GPLLYVADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCSELRETYDHAELPIIM
LTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLTASKAEMRHMENKVLESELRQRAVVEASLLETQGRLLEQLE
SAPEAIICLREDQRIRFANEAACKLFKRSLEQLKRSSADELIAPKYLTVKQPHYCGKIDIYIEDIRQNIEADILKLPEGS
GLDVMYIFNVGGGANAARIHNLETAVEVLSSYAFDGDRDQLQKLKELGGEFTRLADKALGNKKDKQDLMREVLVDAMTHA
LDYWESVTGESKFAFAEQSGLWRVYLDRSTLQTRTLDKYMRIETLPKTPRWRTVLSSIEFILEHCKEQSPERAYIEAQRD
KLQRLLTS

Nucleotide

• Length: 3387 bp

>NTDB_id=702727 NI380_RS03420 WP_005461251.1 712965..716351(-) (chiS) [Vibrio parahaemolyticus strain BM26A]
ATGTTTAAATTCTACAAAAAACAGAAATTTAAGCGCCTTCAGAGTACGCTGATGACTGCGTTTCTTGTCCTCAGCATTAC
GCCTCTTACCATCACTGCGATTTTTTTCCTGCAATCCCATAGTAAAGATCTGCAAGAACAGAGCACTTCACATCTGCTTT
CTGTTCGTGATACCAAACAACAACAGATCCTCGACTACTTCGAAGCGCAAGAAACCGAAGTCATGGGATTTGTACGCTCT
GAGCTCGCGTATGCCAGTGGTGGTCGTTTTTACGGCCTCGTCAATGCATTTAGCCGTTTAGGCAATGATATTGAAGAAGC
ACGTGAAAATGCTCAGCAACGTTATATAGAAGGCAGCGGTGACCAAATCAAAACATCGATTTTGCCGGAGTCCTCAAATT
ATGTCGGCAGTGAACGTTATCGCTTACTCCACAAACGTTATCACTGGGCATATCTGGAGCTACTCAAACGCTCAGATTTT
AATGATATTTTGCTGGTCGATATTAACGGCAACGTGACTTATTCCATCAACAAAGACGACAACTACGGTACTAACCTACT
AACGGGGCGCTACAAAGACTCGGCATTAGGTAAAACCTTTAAACGTCTAGCTGATGACGTCAACGAACGCCGCAAAGTGA
ATGAAGATTATACGCCCGTCATTATTTCTGATTTTGAACTGGAACATGGTCGACAAGTCGCTTGGCTTGGTGCACCTATC
GTTCAACAAGGCTATTTGCACAGCTATGCTATGTTCCGTTTACCAAACAACGGCATTACCAAGCTGATCGCAGATAAGAA
CCGTGAATCGTCCATCAACACTCTACTGGTCGGCAGCGATCAGCAACCACGTACGATTAATACCAAGCAAGACAGTATTC
AAAACAGTCTTGAAGTCATCGATAAAGCTTTAGCGGGACAAACCGACGTTGGCACCTACACCAATGGACTTGGCGAAGAA
ATTATCGCTGCATTTGCCCCAATTCAAACACGCGGTATTACATGGGCGCTCGTGGTTCAACTTCCAGAAAAAGAGGCGTT
TTCACGCATTCATCAACTGGAAAAGCTCTTCGTTATCGCCATGCTAATCGCGATCATTCTTGTGGTGATTGCATCGCATT
ATTTGTCCAACTTCATTACATCACCACTGCTGAAGCTGACTTGGGCGGCGGAGAAAGTATCCGCTGGCGACCTCGACGAA
ACGACATTCAATACCGAACGTAAAGATGAAATCGGTCGCTTGGCTATCAGCTTCGAACGTATGCAGCGCTCGATTCGAGA
AAAAATCCAAACCATCAAACAGCAAAACGAAGAACTTGAAAGCAACATCAAGCTGATTCAGAAGCAAAATGATGAGTTGC
AACTGGCTGATAAACTGAAAGATGAGTTCCTCGCAACAACCTCGCACGAATTGCGTACACCGCTACATGGCATGGTTGGG
ATAGCAGAAACCCTTGTGTCAGGAGCAAATGGAGTCATTCCCGCCAGTCAAAAATACCAACTTGATATCATTATCAAAAG
TGGTCAACGCTTAGCTAACCTCGTAGACGATTTATTGGATTACCACAAAATGCGCTATGGCAGCATGGATATCCAAAAAT
CGGCAGTAAGCTTAGCCAGTGCAACACGCTTGGTGCTTGAGCTTTCTAATCACCTGCTAGGCAATAAGACCATTCGCATC
ATCAACCAAGTACCAGCCGACCTTAAAGCCGTTTCGGCCGATCCTCAACGCCTCGAGCAAGTGCTGTATAACTTGATTGG
CAATGCCATTAAATACACCTCAGAAGGTAAGATCGTCATTTCCGCTACCATTGTTGACGATCACGTCCGAGTGCAAGTGG
TCGATACTGGTCAGGGGATTCCAGCAGAACATCTTGAGCATATTTTTGAGCCTTTAATTCAAGCTGGCCAAGATGCAAGT
CGCTATCGTCAAGGTGCGGGACTGGGACTATCGATTAGCCGCCAACTGATTGAGTTGATGGGCGGTTCACTTTACGTGAG
CAGCCAGCCGATGGTCGGCACCACGTTTAGTTTCACACTGCCATTGGCCAGCGAAGAGGAAATCCAAGCAACTCAAACCT
TAGTGGCGCGTGGGCACTTCCAAATTCCTGAGATTAATTTGGAAAATGGCGACGACTTATCGCTACCCGAGAACCCTGAT
GGCCCACTGCTTTACGTCGCAGATGATGAACCCGTTAACTTGCGAGTACTGGAAAGCTTCTTACGCCTAGAAGGATACCG
CGTTCGTACCGTTTCAGATGGCCCAGAAACGCTGGCGCTGGTTGAACAAGAAAAGCCGGAACTGCTGTTACTCGACATTA
TGATGCCCGGCATGAGCGGCTACCAAGTATGTAGTGAACTACGTGAAACCTATGATCATGCTGAGCTACCTATCATTATG
CTCACCGCTCTCAGCCAAACAGAAGACCGTGTGAGAGGCTTTGAAGCAGGCGCGAATGACTACTTATCGAAGCCATTCAA
CAAACAAGAATTGGCGGCACGTATCCAAGCGCATTTAACAGCAAGTAAAGCGGAAATGCGCCATATGGAAAACAAAGTGC
TGGAGTCAGAGCTTAGACAGCGAGCTGTCGTCGAAGCAAGCCTTCTTGAAACTCAAGGTCGTTTGTTGGAACAGCTAGAA
TCTGCACCGGAAGCTATTATTTGTCTGCGAGAAGATCAGCGTATTCGTTTTGCCAACGAAGCGGCTTGTAAGCTATTCAA
ACGCAGTTTAGAGCAACTTAAACGCTCATCAGCTGACGAACTGATCGCACCAAAATATTTGACGGTGAAGCAGCCTCATT
ATTGCGGCAAGATTGATATCTACATCGAGGATATTCGTCAAAACATTGAAGCCGACATTCTAAAACTGCCAGAAGGCTCT
GGCTTAGATGTGATGTACATCTTTAATGTCGGTGGTGGAGCTAACGCCGCGCGTATTCATAACCTAGAAACTGCGGTAGA
AGTACTCTCAAGTTATGCATTCGATGGTGATAGAGACCAGTTGCAGAAACTCAAAGAGCTTGGTGGCGAGTTTACTCGTT
TGGCAGATAAGGCTTTGGGCAACAAAAAAGATAAGCAAGATTTGATGCGTGAAGTGTTGGTCGATGCCATGACGCATGCA
TTAGACTATTGGGAGTCTGTTACGGGTGAAAGTAAATTTGCGTTTGCCGAACAAAGTGGACTGTGGCGCGTCTACCTCGA
CCGAAGCACACTGCAAACCCGCACGCTCGATAAATACATGCGTATCGAAACTCTGCCTAAAACACCGCGCTGGAGAACGG
TTCTGAGTTCGATTGAGTTTATTCTTGAACACTGTAAAGAACAGAGCCCTGAACGTGCTTACATCGAAGCACAGCGCGAT
AAATTGCAAAGACTGCTCACTAGCTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (726-836)

• HAMP domain (HAMP) (375-427)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

3D structure

• AlphaFold DB: Q87LY0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.882	100	0.77