Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   PCP67_RS24395 Genome accession   NZ_CP115289
Coordinates   5196588..5196944 (+) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain F004     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5191588..5201944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP67_RS24370 (PCP67_24365) fabF 5191800..5193044 (+) 1245 WP_043511655.1 beta-ketoacyl-ACP synthase II -
  PCP67_RS24375 (PCP67_24370) pabC 5193044..5193859 (+) 816 WP_034082729.1 aminodeoxychorismate lyase -
  PCP67_RS24380 (PCP67_24375) mltG 5193865..5194914 (+) 1050 WP_033955214.1 endolytic transglycosylase MltG -
  PCP67_RS24385 (PCP67_24380) tmk 5194943..5195575 (+) 633 WP_034024849.1 dTMP kinase -
  PCP67_RS24390 (PCP67_24385) - 5195568..5196554 (+) 987 WP_023875119.1 DNA polymerase III subunit delta' -
  PCP67_RS24395 (PCP67_24390) pilZ 5196588..5196944 (+) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  PCP67_RS24400 (PCP67_24395) - 5196959..5197735 (+) 777 WP_003091117.1 TatD family hydrolase -
  PCP67_RS24405 (PCP67_24400) - 5197961..5199094 (-) 1134 WP_074222393.1 aminotransferase class V-fold PLP-dependent enzyme -
  PCP67_RS24410 (PCP67_24405) - 5199180..5199818 (+) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  PCP67_RS24415 (PCP67_24410) - 5199985..5200881 (+) 897 WP_003091113.1 radical SAM protein -
  PCP67_RS24420 (PCP67_24415) - 5200946..5201578 (+) 633 WP_003091112.1 DUF4823 domain-containing protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=702234 PCP67_RS24395 WP_003091119.1 5196588..5196944(+) (pilZ) [Pseudomonas aeruginosa strain F004]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=702234 PCP67_RS24395 WP_003091119.1 5196588..5196944(+) (pilZ) [Pseudomonas aeruginosa strain F004]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAGGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449