Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   M2Y57_RS07760 Genome accession   NZ_AP023345
Coordinates   1325983..1326243 (-) Length   86 a.a.
NCBI ID   WP_245025040.1    Uniprot ID   -
Organism   Helicobacter pylori strain JSHR31     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1320983..1331243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Y57_RS07710 (JSHR31_12350) - 1321418..1321546 (-) 129 WP_001185489.1 hypothetical protein -
  M2Y57_RS06265 (JSHR31_12360) - 1321546..1323479 (-) 1934 Protein_1226 type IA DNA topoisomerase -
  M2Y57_RS06270 (JSHR31_12380) - 1323472..1325970 (-) 2499 WP_248425799.1 VirB4 family type IV secretion system protein -
  M2Y57_RS07760 (JSHR31_12390) comB3 1325983..1326243 (-) 261 WP_245025040.1 virB3 type IV secretion protein Machinery gene
  M2Y57_RS06275 (JSHR31_12400) - 1326244..1326546 (-) 303 WP_000650126.1 TrbC/VirB2 family protein -
  M2Y57_RS06280 (JSHR31_12420) - 1326536..1328451 (-) 1916 Protein_1230 toprim domain-containing protein -
  M2Y57_RS06285 (JSHR31_12430) - 1328462..1329226 (-) 765 WP_248425800.1 hypothetical protein -
  M2Y57_RS06290 (JSHR31_12440) - 1329280..1329714 (+) 435 Protein_1232 HNH endonuclease family protein -
  M2Y57_RS06295 (JSHR31_12450) - 1330070..1330879 (-) 810 WP_248425801.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10182.05 Da        Isoelectric Point: 4.6082

>NTDB_id=70182 M2Y57_RS07760 WP_245025040.1 1325983..1326243(-) (comB3) [Helicobacter pylori strain JSHR31]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TREYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=70182 M2Y57_RS07760 WP_245025040.1 1325983..1326243(-) (comB3) [Helicobacter pylori strain JSHR31]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTCTATTATATGGCGTAGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAGAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

43.678

100

0.442

Multiple sequence alignment