Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PCP51_RS25225 Genome accession   NZ_CP115283
Coordinates   5412238..5412762 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa strain F009     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5407238..5417762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP51_RS25210 (PCP51_25210) aroB 5408366..5409472 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  PCP51_RS25215 (PCP51_25215) aroK 5409522..5410040 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PCP51_RS25220 (PCP51_25220) pilQ 5410052..5412184 (-) 2133 WP_003141780.1 type 4a pilus secretin PilQ Machinery gene
  PCP51_RS25225 (PCP51_25225) comL/pilP 5412238..5412762 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PCP51_RS25230 (PCP51_25230) pilO 5412759..5413382 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  PCP51_RS25235 (PCP51_25235) pilN 5413379..5413975 (-) 597 WP_003141783.1 type 4a pilus biogenesis protein PilN -
  PCP51_RS25240 (PCP51_25240) pilM 5413975..5415039 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PCP51_RS25245 (PCP51_25245) - 5415224..5417695 (+) 2472 WP_003141786.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=701707 PCP51_RS25225 WP_003116136.1 5412238..5412762(-) (comL/pilP) [Pseudomonas aeruginosa strain F009]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=701707 PCP51_RS25225 WP_003116136.1 5412238..5412762(-) (comL/pilP) [Pseudomonas aeruginosa strain F009]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAC
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCAGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GACGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362