Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PCP80_RS27435 Genome accession   NZ_CP115280
Coordinates   5840956..5841552 (-) Length   198 a.a.
NCBI ID   WP_003111077.1    Uniprot ID   Q02K17
Organism   Pseudomonas aeruginosa strain F010     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5835956..5846552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP80_RS27410 (PCP80_27420) - 5836302..5836499 (-) 198 Protein_5414 TetR family transcriptional regulator -
  PCP80_RS27415 (PCP80_27425) - 5836592..5838175 (+) 1584 WP_003121915.1 flavin-containing monooxygenase -
  PCP80_RS27420 (PCP80_27430) - 5838172..5839059 (+) 888 WP_009314747.1 SDR family NAD(P)-dependent oxidoreductase -
  PCP80_RS27425 (PCP80_27435) - 5839133..5839672 (+) 540 WP_023101375.1 CbrC family protein -
  PCP80_RS27430 (PCP80_27440) - 5839685..5840833 (-) 1149 WP_003103930.1 acyl-CoA dehydrogenase family protein -
  PCP80_RS27435 (PCP80_27445) recR 5840956..5841552 (-) 597 WP_003111077.1 recombination mediator RecR Machinery gene
  PCP80_RS27440 (PCP80_27450) - 5841631..5841957 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  PCP80_RS27445 (PCP80_27455) dnaX 5842003..5844066 (-) 2064 WP_034023328.1 DNA polymerase III subunit gamma/tau -
  PCP80_RS27450 (PCP80_27460) - 5844103..5844969 (+) 867 WP_021264554.1 substrate-binding periplasmic protein -
  PCP80_RS27455 (PCP80_27465) - 5845148..5846230 (-) 1083 WP_003133016.1 type I restriction endonuclease -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21201.48 Da        Isoelectric Point: 6.3332

>NTDB_id=701631 PCP80_RS27435 WP_003111077.1 5840956..5841552(-) (recR) [Pseudomonas aeruginosa strain F010]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRRCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=701631 PCP80_RS27435 WP_003111077.1 5840956..5841552(-) (recR) [Pseudomonas aeruginosa strain F010]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCGGTGCCGTACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGCGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02K17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48