Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NH461_RS02685 Genome accession   NZ_CP099734
Coordinates   543402..544457 (+) Length   351 a.a.
NCBI ID   WP_261601790.1    Uniprot ID   -
Organism   Photobacterium sp. TY1-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 538402..549457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NH461_RS02670 (NH461_02665) mutS 538981..541554 (-) 2574 WP_261601787.1 DNA mismatch repair protein MutS -
  NH461_RS02675 (NH461_02670) - 541971..542594 (+) 624 WP_261601788.1 hypothetical protein -
  NH461_RS02680 (NH461_02675) pncC 542776..543267 (+) 492 WP_261601789.1 nicotinamide-nucleotide amidase -
  NH461_RS02685 (NH461_02680) recA 543402..544457 (+) 1056 WP_261601790.1 recombinase RecA Machinery gene
  NH461_RS02690 (NH461_02685) recX 544628..545089 (+) 462 WP_261601791.1 recombination regulator RecX -
  NH461_RS02695 (NH461_02690) alaS 545346..547970 (+) 2625 WP_261601792.1 alanine--tRNA ligase -
  NH461_RS02700 (NH461_02695) - 548029..549225 (+) 1197 WP_261601793.1 aspartate kinase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37711.22 Da        Isoelectric Point: 4.9563

>NTDB_id=701394 NH461_RS02685 WP_261601790.1 543402..544457(+) (recA) [Photobacterium sp. TY1-4]
MDDNKQKALAAALGQIEKQFGKGSIMKLGDNRAMDIETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIA
AAQRQGKTCAFIDAEHALDPVYAQKLGVDIDNLLVSQPDTGEQALEIADALARSGAVDIMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKITGNLKASNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNE
TRIKVVKNKIAAPFKQAETQILYGQGFNRLGELVDLGVKHKMVEKAGAWYSYQGDKIGQGKANACKFLGEHPELAEELDK
KLRDLLLTPVKPEDVKADVAEPVDSEEDQAF

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=701394 NH461_RS02685 WP_261601790.1 543402..544457(+) (recA) [Photobacterium sp. TY1-4]
ATGGACGACAACAAGCAGAAGGCTCTTGCCGCCGCGTTAGGTCAGATTGAAAAGCAGTTCGGGAAGGGGTCGATCATGAA
GCTCGGCGACAACCGGGCGATGGATATTGAAACTGTGTCTACCGGCTCCCTGTCGCTGGATATCGCTTTGGGCGCGGGCG
GTCTGCCGATGGGACGTATCGTTGAGATTTACGGCCCTGAGTCTTCAGGTAAAACAACGCTGACGCTTGAAGTCATTGCC
GCCGCGCAGCGCCAGGGCAAGACCTGTGCGTTCATCGATGCTGAGCATGCGCTCGATCCGGTGTATGCCCAGAAACTGGG
TGTGGATATTGATAACCTGCTGGTGTCTCAGCCGGATACCGGTGAGCAGGCGCTGGAAATTGCAGATGCCCTGGCACGTT
CCGGTGCGGTAGACATCATGGTTGTGGACTCCGTGGCAGCCCTGACGCCAAAAGCTGAGATCGAAGGGGAAATGGGTGAC
AGCCACATGGGTCTGCAGGCGCGAATGCTGTCTCAGGCGATGCGAAAGATCACCGGCAACCTGAAAGCATCGAACTGTAT
GTGTATCTTCATCAACCAGATCCGCATGAAGATCGGGGTGATGTTTGGTAACCCAGAAACCACCACCGGTGGTAACGCTC
TGAAATTCTACGCATCGGTTCGTCTGGACATCCGCCGTACCGGTGCGATCAAAGATGGCGATGAAGTCGTGGGTAACGAA
ACCCGGATCAAGGTCGTGAAGAACAAAATTGCGGCGCCGTTTAAGCAAGCGGAAACGCAGATCCTGTACGGTCAGGGCTT
CAACCGCCTGGGCGAGCTGGTGGATCTGGGCGTGAAACACAAGATGGTCGAAAAAGCCGGCGCCTGGTACAGCTACCAGG
GGGATAAAATCGGCCAGGGTAAAGCCAATGCCTGTAAATTCCTGGGCGAGCACCCGGAGCTGGCTGAAGAGCTGGACAAA
AAACTGCGTGACCTACTGCTGACGCCGGTGAAGCCGGAGGATGTAAAAGCGGATGTGGCGGAGCCGGTTGACAGCGAAGA
AGATCAGGCATTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

89.97

93.732

0.843
  recA Vibrio cholerae strain A1552

89.97

93.732

0.843
  recA Pseudomonas stutzeri DSM 10701

72.046

98.86

0.712
  recA Acinetobacter baylyi ADP1

72.727

97.151

0.707
  recA Acinetobacter baumannii D1279779

75

93.447

0.701
  recA Glaesserella parasuis strain SC1401

67.63

98.575

0.667
  recA Ralstonia pseudosolanacearum GMI1000

69.113

93.162

0.644
  recA Neisseria gonorrhoeae strain FA1090

68.098

92.877

0.632
  recA Neisseria gonorrhoeae MS11

68.098

92.877

0.632
  recA Neisseria gonorrhoeae MS11

68.098

92.877

0.632
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.934

94.302

0.584
  recA Bacillus subtilis subsp. subtilis str. 168

63.551

91.453

0.581
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.154

92.593

0.576
  recA Helicobacter pylori strain NCTC11637

61.231

92.593

0.567
  recA Streptococcus pneumoniae D39

61.61

92.023

0.567
  recA Streptococcus pneumoniae TIGR4

61.61

92.023

0.567
  recA Streptococcus pneumoniae R6

61.61

92.023

0.567
  recA Streptococcus pneumoniae Rx1

61.61

92.023

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.366

93.447

0.564
  recA Helicobacter pylori 26695

60.923

92.593

0.564
  recA Streptococcus pyogenes NZ131

60.923

92.593

0.564
  recA Latilactobacillus sakei subsp. sakei 23K

61.682

91.453

0.564
  recA Streptococcus mutans UA159

60.615

92.593

0.561
  recA Streptococcus mitis NCTC 12261

60.372

92.023

0.556
  recA Streptococcus mitis SK321

60.372

92.023

0.556
  recA Lactococcus lactis subsp. cremoris KW2

58.514

92.023

0.538