Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   PCP64_RS19855 Genome accession   NZ_CP115276
Coordinates   4219275..4219631 (+) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain F013     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4214275..4224631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP64_RS19830 (PCP64_19825) fabF 4214487..4215731 (+) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -
  PCP64_RS19835 (PCP64_19830) pabC 4215731..4216546 (+) 816 WP_003110198.1 aminodeoxychorismate lyase -
  PCP64_RS19840 (PCP64_19835) mltG 4216552..4217601 (+) 1050 WP_003104128.1 endolytic transglycosylase MltG -
  PCP64_RS19845 (PCP64_19840) tmk 4217630..4218262 (+) 633 WP_003091125.1 dTMP kinase -
  PCP64_RS19850 (PCP64_19845) - 4218255..4219241 (+) 987 WP_003104126.1 DNA polymerase III subunit delta' -
  PCP64_RS19855 (PCP64_19850) pilZ 4219275..4219631 (+) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  PCP64_RS19860 (PCP64_19855) - 4219646..4220422 (+) 777 WP_019681501.1 TatD family hydrolase -
  PCP64_RS19865 (PCP64_19860) - 4220648..4221781 (-) 1134 WP_003118082.1 aminotransferase class V-fold PLP-dependent enzyme -
  PCP64_RS19870 (PCP64_19865) - 4221867..4222505 (+) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  PCP64_RS19875 (PCP64_19870) - 4222655..4223551 (+) 897 WP_019681500.1 radical SAM protein -
  PCP64_RS19880 (PCP64_19875) - 4223616..4224248 (+) 633 WP_126861039.1 DUF4823 domain-containing protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=701311 PCP64_RS19855 WP_003091119.1 4219275..4219631(+) (pilZ) [Pseudomonas aeruginosa strain F013]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=701311 PCP64_RS19855 WP_003091119.1 4219275..4219631(+) (pilZ) [Pseudomonas aeruginosa strain F013]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCTGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449