Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NF677_RS22555 Genome accession   NZ_CP099599
Coordinates   5048624..5049970 (+) Length   448 a.a.
NCBI ID   WP_252884850.1    Uniprot ID   -
Organism   Pseudomonas siliginis strain OTU6ESPEB1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5043624..5054970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF677_RS22530 (NF677_22530) pgeF 5043838..5044560 (-) 723 WP_150638502.1 peptidoglycan editing factor PgeF -
  NF677_RS22535 (NF677_22535) rluD 5044557..5045519 (-) 963 WP_016773140.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NF677_RS22540 (NF677_22540) - 5045671..5046687 (+) 1017 WP_056790462.1 outer membrane protein assembly factor BamD -
  NF677_RS22545 (NF677_22545) - 5046815..5047048 (+) 234 WP_056790465.1 PP0621 family protein -
  NF677_RS22550 (NF677_22550) pilS 5047038..5048627 (+) 1590 WP_150742245.1 ATP-binding protein Regulator
  NF677_RS22555 (NF677_22555) pilR 5048624..5049970 (+) 1347 WP_252884850.1 sigma-54 dependent transcriptional regulator Regulator
  NF677_RS22560 (NF677_22560) thiO 5050063..5051163 (-) 1101 WP_252882702.1 glycine oxidase ThiO -
  NF677_RS22565 (NF677_22565) - 5051221..5051622 (-) 402 WP_252884851.1 type IV pilin protein -
  NF677_RS22570 (NF677_22570) - 5051638..5054727 (-) 3090 WP_252884852.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50167.48 Da        Isoelectric Point: 6.4300

>NTDB_id=700937 NF677_RS22555 WP_252884850.1 5048624..5049970(+) (pilR) [Pseudomonas siliginis strain OTU6ESPEB1]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLETFSARNLGEAQALLQREHFDLCLTDMRLPDGTGLELVQHIQQRDPNLP
VAMITAYGSLETAINALKAGAFDFLTKPVELPRLRELVSSALRLPTAGGLSTAIERRLLGDSPPMANLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASRPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVSAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
MHVLKRLAKDTGQPEARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAQDLRLSEGNCTADGAMADLTQVDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=700937 NF677_RS22555 WP_252884850.1 5048624..5049970(+) (pilR) [Pseudomonas siliginis strain OTU6ESPEB1]
TTGAATACAAGCCCACGGCAAAAAATTCTAATCGTCGACGACGAACCGGATATCCGCGAGCTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGAGACCTTCAGCGCACGCAATCTGGGCGAGGCTCAGGCGCTGTTGCAGCGCGAGCACTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGGCTGGAGCTCGTGCAACACATTCAGCAACGCGATCCAAACCTGCCG
GTGGCGATGATCACTGCGTACGGAAGCCTGGAAACGGCCATCAATGCATTGAAGGCCGGGGCGTTCGATTTCCTCACCAA
ACCGGTGGAGCTGCCGCGCCTGCGCGAACTGGTCAGCTCGGCGCTGCGCCTGCCGACAGCGGGCGGCTTGAGCACGGCAA
TCGAGCGACGCTTGCTGGGCGATTCGCCGCCGATGGCCAATCTGCGCAAGCAGATCGACAAGCTCGCACGCAGTCAGGCG
CCGGTGTACATCAGTGGTGAATCCGGCAGCGGCAAAGAACTGGTCGCACGTCTGATTCACGAACAAGGCCCGCGCGCCAG
CCGGCCGTTTGTGCCGGTGAACTGCGGGGCAATTCCGTCGGAACTGATGGAAAGCGAATTTTTCGGCCACCGCAAAGGCA
GCTTCACCGGTGCCGTCGAAGACAAGCCGGGGCTATTCCAGGCGGCCCATGGCGGCACTCTGTTTCTCGATGAAGTCGCC
GATCTGCCACTGTCGATGCAAGTGAAACTGCTGCGGGCAATTCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAGGA
AACGGTGGTCGACGTGCGTATCCTTTGCGCCACGCACAAAGACCTTGAAGCCGAAGTTTCAGCCGAGCGTTTCCGCCAGG
ATCTGTATTACCGGCTCAACGTCATCGAACTGCGCGTGCCGTCCCTGCGCGAACGCCGCGACGACATCGAGGCGCTTGCC
ATGCACGTGCTCAAGCGCCTGGCCAAAGACACCGGACAACCCGAAGCGCGCCTGCATCCGCAAGCGCTCGAGGCGCTGAA
GAACTATCGCTTTCCCGGCAATGTGCGCGAACTGGAGAATGTTCTCGAACGCGCGCACACCCTGTGTGAAAACCGCACGA
TCGAAGCGCAGGATCTGCGTTTGAGCGAAGGCAATTGCACGGCGGACGGGGCGATGGCCGATCTGACGCAGGTCGACAAT
CTTGAGGATTATCTGGAGAGCGTCGAGAGGAAGCTGATTTTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTCAGGTCGATGCGTTATCGGCTGAAGAAATTGGGACTGGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.33

98.884

0.775
  pilR Acinetobacter baumannii strain A118

49.673

100

0.509
  luxO Vibrio cholerae strain A1552

40.098

91.295

0.366