Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PCP29_RS06705 Genome accession   NZ_CP115269
Coordinates   1410998..1411594 (+) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain F020     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1405998..1416594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP29_RS06695 (PCP29_06690) - 1407278..1409749 (-) 2472 WP_019726988.1 penicillin-binding protein 1A -
  PCP29_RS06700 (PCP29_06695) pilM 1409934..1410998 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PCP29_RS06705 (PCP29_06700) pilN 1410998..1411594 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PCP29_RS06710 (PCP29_06705) pilO 1411591..1412214 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PCP29_RS06715 (PCP29_06710) comL/pilP 1412211..1412735 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PCP29_RS06720 (PCP29_06715) pilQ 1412789..1414933 (+) 2145 WP_019726987.1 type 4a pilus secretin PilQ Machinery gene
  PCP29_RS06725 (PCP29_06720) aroK 1414945..1415463 (+) 519 WP_003095833.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=700541 PCP29_RS06705 WP_003095839.1 1410998..1411594(+) (pilN) [Pseudomonas aeruginosa strain F020]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=700541 PCP29_RS06705 WP_003095839.1 1410998..1411594(+) (pilN) [Pseudomonas aeruginosa strain F020]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAAGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369