Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LPT22_RS05865 Genome accession   NZ_CP099506
Coordinates   1218511..1218957 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 0316-H-5A     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1213511..1223957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPT22_RS05835 (LPT22_05835) gcvPA 1214437..1215783 (-) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  LPT22_RS05840 (LPT22_05840) gcvT 1215803..1216894 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  LPT22_RS05845 (LPT22_05845) - 1217053..1217577 (-) 525 WP_001015120.1 shikimate kinase -
  LPT22_RS05850 (LPT22_05850) - 1217567..1217713 (-) 147 WP_001789879.1 hypothetical protein -
  LPT22_RS05855 (LPT22_05855) comGF 1217810..1218307 (-) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  LPT22_RS05860 (LPT22_05860) comGE 1218225..1218524 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  LPT22_RS05865 (LPT22_05865) comGD 1218511..1218957 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  LPT22_RS05870 (LPT22_05870) comGC 1218935..1219246 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  LPT22_RS05875 (LPT22_05875) comGB 1219260..1220330 (-) 1071 WP_000776425.1 competence type IV pilus assembly protein ComGB Machinery gene
  LPT22_RS05880 (LPT22_05880) comGA 1220302..1221276 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  LPT22_RS05885 (LPT22_05885) - 1221328..1221951 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  LPT22_RS05890 (LPT22_05890) - 1221948..1222277 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  LPT22_RS05895 (LPT22_05895) - 1222277..1223263 (-) 987 WP_000161315.1 ROK family glucokinase -
  LPT22_RS05900 (LPT22_05900) - 1223260..1223463 (-) 204 WP_000087559.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=700235 LPT22_RS05865 WP_001796473.1 1218511..1218957(-) (comGD) [Staphylococcus aureus strain 0316-H-5A]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=700235 LPT22_RS05865 WP_001796473.1 1218511..1218957(-) (comGD) [Staphylococcus aureus strain 0316-H-5A]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAAATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACAATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993