Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PCP74_RS06090 Genome accession   NZ_CP115263
Coordinates   1296715..1297239 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain F023     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1291715..1302239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP74_RS06070 (PCP74_06070) - 1291782..1294253 (-) 2472 WP_003095841.1 penicillin-binding protein 1A -
  PCP74_RS06075 (PCP74_06075) pilM 1294438..1295502 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PCP74_RS06080 (PCP74_06080) pilN 1295502..1296098 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PCP74_RS06085 (PCP74_06085) pilO 1296095..1296718 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PCP74_RS06090 (PCP74_06090) comL/pilP 1296715..1297239 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PCP74_RS06095 (PCP74_06095) pilQ 1297293..1299437 (+) 2145 WP_003103267.1 type 4a pilus secretin PilQ Machinery gene
  PCP74_RS06100 (PCP74_06100) aroK 1299449..1299967 (+) 519 WP_003095833.1 shikimate kinase AroK -
  PCP74_RS06105 (PCP74_06105) aroB 1300017..1301123 (+) 1107 WP_019726985.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=700235 PCP74_RS06090 WP_003095836.1 1296715..1297239(+) (comL/pilP) [Pseudomonas aeruginosa strain F023]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=700235 PCP74_RS06090 WP_003095836.1 1296715..1297239(+) (comL/pilP) [Pseudomonas aeruginosa strain F023]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362