Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L1F06_RS02880 Genome accession   NZ_CP099397
Coordinates   611544..612608 (+) Length   354 a.a.
NCBI ID   WP_003246678.1    Uniprot ID   -
Organism   Pseudomonas hydrolytica strain DSWY01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 606544..617608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1F06_RS02870 (L1F06_002870) - 607617..608885 (+) 1269 WP_011920758.1 malic enzyme-like NAD(P)-binding protein -
  L1F06_RS02875 (L1F06_002875) - 608951..611362 (-) 2412 WP_129481891.1 penicillin-binding protein 1A -
  L1F06_RS02880 (L1F06_002880) comM 611544..612608 (+) 1065 WP_003246678.1 pilus assembly protein PilM Machinery gene
  L1F06_RS02885 (L1F06_002885) pilN 612608..613180 (+) 573 WP_129481890.1 type 4a pilus biogenesis protein PilN -
  L1F06_RS02890 (L1F06_002890) pilO 613177..613797 (+) 621 WP_129481889.1 type 4a pilus biogenesis protein PilO -
  L1F06_RS02895 (L1F06_002895) pilP 613797..614321 (+) 525 WP_129481888.1 type 4a pilus biogenesis lipoprotein PilP -
  L1F06_RS02900 (L1F06_002900) pilQ 614376..616445 (+) 2070 WP_177491049.1 type IV pilus secretin PilQ Machinery gene
  L1F06_RS02905 (L1F06_002905) aroK 616451..616969 (+) 519 WP_003246673.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37831.21 Da        Isoelectric Point: 4.4688

>NTDB_id=699469 L1F06_RS02880 WP_003246678.1 611544..612608(+) (comM) [Pseudomonas hydrolytica strain DSWY01]
MLGLFTKKANTLLGIDISSTSVKLLELSRSGSRYKVEAYAVEPLPPNAVVEKNIAELEGVGQALSRVLAKAKTGVKTAAV
AVAGSAVITKTIEMEAGLSEDELENQLKIEADQYIPYPLEEVAIDFEVQGPAARNPERVEVLLAACRKENVEVREAALAL
AGLTAKVVDVEAYALERAYSLLEAQLGGGHDELTVAVVDIGATMTTLSVLHNGRTIYTREQLFGGKQLTEEVQRRYGLSV
EEAGLAKKQGGLPDDYDSEVLQPFKEAVVQQVSRSLQFFFAAGQFNDVDYILLAGGTASIPDLDRLIQQKIGTQTLVANP
FADMALSSKVNAGALASDAPALMIACGLAMRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=699469 L1F06_RS02880 WP_003246678.1 611544..612608(+) (comM) [Pseudomonas hydrolytica strain DSWY01]
GTGCTAGGGCTCTTCACTAAGAAAGCGAATACGCTGCTGGGGATCGATATCAGCTCGACTTCGGTCAAGCTCCTCGAACT
GAGTCGCTCGGGAAGCCGCTACAAGGTAGAGGCTTACGCAGTCGAGCCGCTCCCGCCAAACGCGGTGGTTGAGAAGAACA
TCGCCGAGCTGGAGGGGGTCGGTCAGGCGCTGTCACGCGTCTTGGCCAAGGCCAAGACCGGCGTCAAGACCGCAGCCGTA
GCGGTCGCCGGTTCGGCGGTCATCACCAAGACCATCGAGATGGAGGCCGGCCTTTCCGAGGATGAACTGGAGAACCAGCT
GAAGATCGAGGCTGACCAGTACATTCCTTATCCGCTCGAAGAAGTCGCGATCGATTTCGAGGTTCAGGGGCCTGCTGCGC
GTAATCCTGAGCGCGTCGAAGTGCTCCTCGCCGCGTGCCGCAAGGAGAACGTCGAAGTTCGCGAGGCTGCGCTGGCGCTT
GCCGGCCTGACGGCCAAGGTGGTCGACGTCGAGGCCTATGCGCTGGAGCGTGCTTACAGTCTGCTGGAGGCACAGCTGGG
TGGCGGCCACGACGAGCTCACCGTGGCTGTCGTCGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCACAACGGTC
GCACCATATATACCCGCGAGCAGCTCTTCGGTGGCAAGCAGCTGACCGAGGAGGTGCAGCGTCGTTATGGTCTTTCCGTC
GAAGAAGCCGGCCTTGCCAAGAAGCAAGGTGGTCTTCCGGATGACTACGACAGCGAGGTTTTGCAACCGTTCAAGGAAGC
TGTCGTTCAACAGGTCTCGCGTTCCCTGCAGTTCTTCTTTGCTGCTGGCCAGTTCAACGATGTCGACTACATCCTTCTGG
CTGGTGGAACCGCGTCCATTCCCGATCTTGATCGACTGATCCAGCAAAAGATCGGCACGCAGACGCTAGTGGCTAATCCC
TTTGCCGATATGGCGCTTAGCAGCAAGGTCAACGCCGGTGCGCTGGCCAGTGATGCGCCGGCACTGATGATTGCCTGTGG
TCTGGCGATGAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

56.78

100

0.568
  pilM Acinetobacter baumannii D1279779

56.78

100

0.568
  comM Acinetobacter baylyi ADP1

54.237

100

0.542
  pilM Legionella pneumophila strain ERS1305867

45.198

100

0.452