Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NDR85_RS01990 Genome accession   NZ_CP098738
Coordinates   373850..374287 (-) Length   145 a.a.
NCBI ID   WP_044161928.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XE48     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 368850..379287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR85_RS01960 (NDR85_01960) - 368980..370116 (+) 1137 WP_044161937.1 zinc-dependent alcohol dehydrogenase -
  NDR85_RS01965 (NDR85_01965) - 370141..370623 (+) 483 Protein_342 RDD family protein -
  NDR85_RS01970 (NDR85_01970) - 370668..371003 (+) 336 WP_044161935.1 YckD family protein -
  NDR85_RS01975 (NDR85_01975) - 371155..371883 (+) 729 WP_044161933.1 AAA family ATPase -
  NDR85_RS01980 (NDR85_01980) - 371956..373389 (+) 1434 WP_044161931.1 glycoside hydrolase family 1 protein -
  NDR85_RS01985 (NDR85_01985) nin/comJ 373425..373823 (-) 399 WP_024120177.1 competence protein ComJ Regulator
  NDR85_RS01990 (NDR85_01990) nucA/comI 373850..374287 (-) 438 WP_044161928.1 DNA-entry nuclease Machinery gene
  NDR85_RS01995 (NDR85_01995) tlpC 374472..376196 (-) 1725 WP_044161927.1 methyl-accepting chemotaxis protein TlpC -
  NDR85_RS02000 (NDR85_02000) hxlB 376305..376862 (-) 558 WP_044161924.1 6-phospho-3-hexuloisomerase -
  NDR85_RS02005 (NDR85_02005) hxlA 376868..377500 (-) 633 WP_003224929.1 3-hexulose-6-phosphate synthase -
  NDR85_RS02010 (NDR85_02010) hxlR 377732..378094 (+) 363 WP_044161922.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15972.70 Da        Isoelectric Point: 4.2415

>NTDB_id=697518 NDR85_RS01990 WP_044161928.1 373850..374287(-) (nucA/comI) [Bacillus halotolerans strain XE48]
MDIIKTLLLVIVVIAAAAVGLIKGDFFSDDQKTSQTEEYDETLAFPSERYPETANHIKDAISEGHSNVCTIDRDGAEERR
EQSLKDVPSKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=697518 NDR85_RS01990 WP_044161928.1 373850..374287(-) (nucA/comI) [Bacillus halotolerans strain XE48]
ATGGACATTATAAAAACTTTACTTCTCGTAATAGTCGTCATAGCAGCTGCAGCTGTTGGCCTGATTAAGGGAGACTTTTT
CTCAGACGATCAAAAAACGTCTCAAACAGAAGAATATGACGAAACACTGGCCTTCCCTTCTGAGCGTTATCCTGAGACAG
CAAATCATATCAAGGACGCAATAAGTGAGGGGCATTCAAATGTGTGCACCATAGACAGAGACGGAGCTGAGGAACGCCGC
GAACAATCATTAAAAGACGTACCTTCCAAAACAGGGTATGACCGAGATGAATGGCCAATGGCCATGTGCAAAGAAGGCGG
TGAAGGGGCTTCTGTAGAATATATTTCTCCCGCTGACAATCGCGGCGCAGGCTCCTGGGTCGGGCATCAGCTGACCGATT
ACCCTGACGGCACAAAGGTTTTATTTACGATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

92.361

99.31

0.917