Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   OS912_RS01410 Genome accession   NZ_CP113266
Coordinates   284025..285692 (-) Length   555 a.a.
NCBI ID   WP_000923583.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain BC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 279025..290692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS912_RS01380 (OS912_01385) - 279325..280111 (-) 787 Protein_279 IS5 family transposase -
  OS912_RS01385 (OS912_01390) - 280119..280421 (-) 303 WP_000590559.1 PTS sugar transporter subunit IIB -
  OS912_RS01390 (OS912_01395) - 280459..280934 (-) 476 Protein_281 PTS sugar transporter subunit IIA -
  OS912_RS01395 (OS912_01400) - 281115..281312 (+) 198 WP_000693366.1 hypothetical protein -
  OS912_RS01400 (OS912_01405) lepA 281393..283216 (-) 1824 WP_001047212.1 translation elongation factor 4 -
  OS912_RS01405 (OS912_01410) - 283295..284023 (-) 729 WP_000133340.1 metallophosphoesterase family protein -
  OS912_RS01410 (OS912_01415) recN 284025..285692 (-) 1668 WP_000923583.1 DNA repair protein RecN Machinery gene
  OS912_RS01415 (OS912_01420) - 285699..286130 (-) 432 WP_001034412.1 arginine repressor -
  OS912_RS01420 (OS912_01425) - 286123..286938 (-) 816 WP_268232960.1 TlyA family RNA methyltransferase -
  OS912_RS01425 (OS912_01430) - 286931..287806 (-) 876 WP_050116605.1 polyprenyl synthetase family protein -
  OS912_RS01430 (OS912_01435) - 287803..288015 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  OS912_RS01435 (OS912_01440) xseA 287993..289333 (-) 1341 WP_000417470.1 exodeoxyribonuclease VII large subunit -
  OS912_RS01440 (OS912_01445) udk 289461..290099 (-) 639 WP_001181378.1 uridine kinase -
  OS912_RS01445 (OS912_01450) - 290207..290509 (-) 303 WP_000985089.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62862.27 Da        Isoelectric Point: 4.5999

>NTDB_id=690488 OS912_RS01410 WP_000923583.1 284025..285692(-) (recN) [Streptococcus pneumoniae strain BC1]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLDLNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QYGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=690488 OS912_RS01410 WP_000923583.1 284025..285692(-) (recN) [Streptococcus pneumoniae strain BC1]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAGTTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGATCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCCATGAATGACATGGAAAGTGTCGAAGAGTATGACCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTCATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGTATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACAGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44