Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   M8964_RS03715 Genome accession   NZ_CP097585
Coordinates   722678..723790 (-) Length   370 a.a.
NCBI ID   WP_007409910.1    Uniprot ID   -
Organism   Bacillus velezensis strain UA1365     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 717678..728790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8964_RS03700 gyrA 717767..720226 (-) 2460 WP_023356657.1 DNA gyrase subunit A -
  M8964_RS03705 gyrB 720442..722358 (-) 1917 WP_011996153.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  M8964_RS03710 - 722415..722660 (-) 246 WP_004392908.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  M8964_RS03715 recF 722678..723790 (-) 1113 WP_007409910.1 DNA replication/repair protein RecF Machinery gene
  M8964_RS03720 rlbA 723806..724021 (-) 216 WP_004392910.1 ribosome maturation protein RlbA -
  M8964_RS03725 dnaN 724156..725292 (-) 1137 WP_007409909.1 DNA polymerase III subunit beta -
  M8964_RS03730 dnaA 725477..726817 (-) 1341 WP_007409908.1 chromosomal replication initiator protein DnaA -
  M8964_RS03735 rpmH 727439..727573 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  M8964_RS03740 rnpA 727727..728077 (+) 351 WP_004392944.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42430.36 Da        Isoelectric Point: 7.0882

>NTDB_id=690388 M8964_RS03715 WP_007409910.1 722678..723790(-) (recF) [Bacillus velezensis strain UA1365]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=690388 M8964_RS03715 WP_007409910.1 722678..723790(-) (recF) [Bacillus velezensis strain UA1365]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGAAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.324

100

0.943