Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   OUY06_RS05870 Genome accession   NZ_CP113247
Coordinates   1159489..1160934 (-) Length   481 a.a.
NCBI ID   WP_056936413.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain CNSC001WB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1154489..1165934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OUY06_RS05845 - 1154655..1154930 (-) 276 WP_011374717.1 HU family DNA-binding protein -
  OUY06_RS05850 der 1155137..1156447 (-) 1311 WP_278319715.1 ribosome biogenesis GTPase Der -
  OUY06_RS05855 rpsA 1156681..1157892 (-) 1212 WP_025015758.1 30S ribosomal protein S1 -
  OUY06_RS05860 cmk 1157987..1158646 (-) 660 WP_025015757.1 (d)CMP kinase -
  OUY06_RS05865 - 1158713..1159420 (-) 708 WP_076645125.1 LysM domain-containing protein -
  OUY06_RS05870 recS 1159489..1160934 (-) 1446 WP_056936413.1 RecQ family ATP-dependent DNA helicase Machinery gene
  OUY06_RS05875 - 1160931..1161959 (-) 1029 WP_025015755.1 helix-turn-helix domain-containing protein -
  OUY06_RS05880 - 1161996..1162226 (+) 231 WP_016265179.1 ferredoxin -
  OUY06_RS05885 - 1162302..1162877 (-) 576 WP_016265180.1 ECF transporter S component -
  OUY06_RS05890 - 1163193..1163963 (-) 771 WP_011374726.1 pseudouridine synthase -
  OUY06_RS05895 scpB 1163966..1164589 (-) 624 WP_076645129.1 SMC-Scp complex subunit ScpB -
  OUY06_RS05900 - 1164573..1165328 (-) 756 WP_025015753.1 segregation/condensation protein A -
  OUY06_RS05905 - 1165337..1165705 (-) 369 WP_025015752.1 hypothetical protein -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 54580.37 Da        Isoelectric Point: 5.2839

>NTDB_id=690291 OUY06_RS05870 WP_056936413.1 1159489..1160934(-) (recS) [Latilactobacillus sakei strain CNSC001WB]
MTSEQLIYDQLAQHFGYSTFKPGQLAVIQSVLAGQETLAVLPTGTGKSLCYQLPAYILGHTTVIVSPLIALMQDQVAQLN
YQGEKRAVAINSNLVPQQKYQLLTHLADYRFIFMAPETISQPEVIQALQRCQIDLFVVDEAHCISQWGIDFRPDYLVLAT
IKAQLRPTATLALTATANDRVRQDILNKLALKNAAQIMTSVDRPNIYLGVSQQPDEQAKNQFLASLVQKSQGPGIIYFSS
RQKTMEIAAFLQQETDLKIAYYHAALSTQERYLIQQQFMQGQLDLICTTNAFGMGINKADIRYVIHYHLPQNIESYLQEI
GRAGRDGQPAYALVLTTPQDLYLQQSLVSFGIPEPGLIRRYYQEPQLFKQSQGNEFELLRRYQQLGMTEEEVIKLLDNRQ
TEKQFSLQTMLDYLTLKGCRRQFIVNYFDQAPKTIEHSETCCGEQDSTDFLAQLDLEQAINYKTAETVVLTGWTGILDQL
F

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=690291 OUY06_RS05870 WP_056936413.1 1159489..1160934(-) (recS) [Latilactobacillus sakei strain CNSC001WB]
ATGACTTCTGAACAACTCATTTATGACCAGTTAGCGCAGCACTTTGGCTATTCAACCTTTAAACCGGGCCAGTTAGCGGT
TATTCAGTCGGTACTTGCTGGGCAGGAGACATTAGCCGTTTTACCAACTGGGACTGGGAAGTCGCTGTGTTATCAATTAC
CGGCCTATATCTTGGGGCATACGACTGTGATTGTCTCGCCACTAATCGCATTAATGCAAGATCAGGTCGCCCAATTGAAT
TACCAAGGGGAAAAGCGAGCTGTCGCCATTAATTCTAATTTAGTGCCTCAGCAAAAATACCAGTTGTTGACGCATTTAGC
GGACTACCGCTTTATTTTTATGGCACCGGAGACTATCAGTCAACCGGAAGTGATTCAAGCGCTCCAACGTTGCCAAATTG
ATTTATTTGTGGTTGATGAGGCCCATTGTATTTCACAATGGGGGATTGATTTTAGACCGGACTATTTAGTTTTAGCAACC
ATCAAGGCCCAATTGCGGCCAACCGCAACATTGGCTTTGACGGCAACTGCCAATGATCGTGTACGCCAAGATATTTTGAA
TAAGTTGGCGTTAAAAAACGCGGCCCAAATCATGACCTCTGTTGATCGCCCCAATATCTATTTGGGCGTGAGCCAACAAC
CTGATGAACAAGCAAAGAATCAATTTTTAGCCAGCTTAGTGCAAAAAAGCCAAGGTCCCGGGATTATTTATTTTTCAAGT
CGGCAAAAGACGATGGAGATTGCGGCCTTTTTGCAGCAAGAAACTGATCTGAAGATTGCGTATTACCACGCGGCGTTATC
AACCCAGGAGCGGTATTTGATTCAACAACAATTTATGCAAGGACAACTTGATTTGATTTGTACAACCAATGCTTTTGGGA
TGGGGATTAATAAGGCGGATATTCGCTATGTGATTCATTATCACCTGCCACAAAACATCGAAAGTTACTTGCAAGAAATC
GGACGGGCAGGTCGAGATGGGCAACCAGCCTATGCTTTAGTCCTAACAACTCCGCAAGATTTATATTTACAACAATCACT
CGTTTCATTTGGAATTCCGGAACCAGGCCTCATTCGGCGCTATTATCAGGAACCGCAATTATTTAAACAAAGTCAAGGCA
ATGAATTTGAACTACTACGTCGCTACCAGCAACTGGGGATGACCGAAGAAGAGGTCATTAAGTTATTGGATAATCGTCAA
ACCGAAAAGCAGTTTTCACTACAAACGATGCTGGATTATTTGACCCTCAAGGGCTGTCGACGGCAATTTATTGTGAACTA
TTTTGACCAGGCACCAAAGACGATTGAACACAGCGAAACGTGTTGCGGGGAACAGGATTCGACCGACTTTTTAGCACAAT
TAGACTTAGAACAGGCTATTAATTATAAAACCGCTGAAACCGTTGTTCTGACTGGTTGGACGGGAATCTTGGACCAATTA
TTTTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(220-326)

DEAD/DEAH box helicase (DEAD)

(22-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

42.257

93.971

0.397