Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   OUY06_RS00645 Genome accession   NZ_CP113247
Coordinates   131311..133602 (+) Length   763 a.a.
NCBI ID   WP_016264411.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain CNSC001WB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 126311..138602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OUY06_RS00620 - 126683..127141 (+) 459 WP_011373843.1 MarR family transcriptional regulator -
  OUY06_RS00625 - 127515..128417 (-) 903 WP_011373844.1 proline-specific peptidase family protein -
  OUY06_RS00630 - 128491..130329 (-) 1839 WP_016264408.1 cation:proton antiporter family protein -
  OUY06_RS00635 crcB 130466..130873 (+) 408 WP_016264409.1 fluoride efflux transporter CrcB -
  OUY06_RS00640 - 130870..131217 (+) 348 WP_016264410.1 CrcB family protein -
  OUY06_RS00645 helD 131311..133602 (+) 2292 WP_016264411.1 RNA polymerase recycling motor HelD Machinery gene
  OUY06_RS00650 coaA 133710..134639 (+) 930 WP_016264412.1 type I pantothenate kinase -
  OUY06_RS00655 guaA 134806..136359 (+) 1554 WP_016264413.1 glutamine-hydrolyzing GMP synthase -
  OUY06_RS00660 - 136480..137694 (-) 1215 WP_052202682.1 site-specific integrase -
  OUY06_RS00665 - 137806..138108 (-) 303 WP_076632042.1 hypothetical protein -
  OUY06_RS00670 - 138127..138414 (-) 288 WP_039098481.1 BRCT domain-containing protein -

Sequence

Protein


Download         Length: 763 a.a.        Molecular weight: 87801.79 Da        Isoelectric Point: 6.3693

>NTDB_id=690252 OUY06_RS00645 WP_016264411.1 131311..133602(+) (helD) [Latilactobacillus sakei strain CNSC001WB]
MTDVQKSLEQSRLTEIIGLIKKAETHFEGAVKRAKSEEKEINENFFNDVRLNFNNDSAMTETAVSIEQQRQMLQERNHSW
QQSSRQLETLQKMEKTPYFARVDFQEKGEPKSESIYIGLGSFTDTDDHFLIYDWRAPISSIYYEGKTGAVTYQTPDGPQD
VNISLKRQFLIEDGQIKALFDTQETIGDQMLLEVLGEKSDTQMKSIVTTIQREQNQIIRNTDADLLFVQGAAGSGKTSAI
LQRIAFLLYRYRGNLDSSQVIMFSPNQLFNDYIADVLPELGEQNMIQMTYFQYVARRLPNMAVQSLFDQFETPVNETDGR
ISRLKESLVFYKAVKKYAAHLEKADMRFRDMKVKGRVLITKEHISEVYYRFNENYHLGNRLDATKESLLRTLSHKVDHET
KADWVTEQAENMSDEEIRELMSGKDFKTGDAESKFIAKQIVLEAFKPVRRSIQRNRFLSIQAQYIHFLRVVPQLVKLADF
DITEEQWQDHVTHFVAQLKAKQMTLQDVTPYLHLYDLMTGKKGERDMRFVFIDEIQDYTPYELAFLKLHFPKARFTLLGD
LNQAIFTKGNSTNLLQQVQQLFDAQNTKVVQLTRSYRSTQQVTDFTKGLLKGGQAIEAFNRVGDKPNLIVRQSEAELVAD
VNRQLAANEADKLSTAIITKTLVQAQELTKMLKETGTKVTLIRSENQRLAAGTLVVPSFLAKGLEFDAIIGWQISAANYN
HEDQRQLLYTICSRAMHRLTLLATDELSPLIDNVDPEKYTLTK

Nucleotide


Download         Length: 2292 bp        

>NTDB_id=690252 OUY06_RS00645 WP_016264411.1 131311..133602(+) (helD) [Latilactobacillus sakei strain CNSC001WB]
TTGACTGACGTACAGAAATCATTGGAACAAAGCCGATTAACAGAAATTATTGGTTTAATTAAAAAAGCTGAGACCCATTT
TGAAGGGGCTGTTAAGCGCGCAAAATCGGAAGAAAAAGAAATTAACGAGAACTTCTTCAACGACGTTCGCCTTAACTTCA
ATAACGATTCCGCGATGACTGAAACCGCCGTTTCGATTGAACAGCAGCGGCAAATGCTACAAGAACGCAATCACTCGTGG
CAACAATCTTCACGGCAATTGGAAACCTTGCAAAAGATGGAAAAGACGCCATACTTTGCCCGTGTTGATTTTCAAGAAAA
GGGTGAACCTAAATCCGAATCAATTTATATCGGGTTAGGCTCATTTACAGATACCGACGATCATTTCTTAATTTATGATT
GGCGGGCACCAATTTCATCAATTTACTATGAAGGTAAGACGGGCGCTGTGACGTACCAAACACCAGACGGTCCGCAAGAT
GTGAATATCTCACTTAAGCGTCAATTTTTGATTGAAGATGGTCAAATTAAGGCCTTATTTGATACGCAAGAAACGATTGG
CGATCAAATGTTATTAGAAGTGTTAGGTGAAAAATCTGATACACAGATGAAGAGTATCGTGACGACGATTCAACGTGAAC
AAAATCAGATTATCCGTAATACCGATGCTGATTTGTTATTCGTTCAAGGGGCAGCTGGCTCAGGGAAAACGTCAGCTATC
TTGCAACGCATCGCGTTTTTACTCTATCGCTATCGGGGCAATTTAGATTCTAGCCAAGTGATCATGTTCTCGCCTAACCA
ATTATTCAACGACTACATCGCAGATGTGTTGCCTGAATTGGGCGAACAAAATATGATTCAAATGACTTACTTCCAATATG
TGGCGCGCCGGTTACCAAACATGGCGGTCCAGAGCCTTTTTGATCAATTCGAAACACCGGTTAACGAAACTGATGGCCGG
ATTAGTCGCTTGAAAGAAAGTCTCGTCTTTTATAAGGCCGTTAAAAAATACGCTGCACATCTTGAAAAAGCCGACATGCG
CTTCCGCGATATGAAGGTCAAGGGCCGCGTCTTGATTACGAAGGAACACATCAGCGAGGTTTATTACCGGTTTAATGAAA
ACTACCATCTCGGCAATCGATTAGATGCGACTAAAGAAAGTTTGTTGCGGACATTGAGCCACAAGGTCGATCACGAAACT
AAGGCCGACTGGGTGACTGAGCAAGCCGAGAATATGAGTGATGAAGAAATCCGCGAATTGATGTCTGGTAAAGATTTCAA
GACGGGTGATGCTGAAAGCAAGTTTATTGCTAAGCAGATCGTGCTAGAAGCGTTCAAACCCGTTCGCCGGTCTATTCAAC
GCAATCGCTTCTTAAGCATCCAGGCGCAATATATTCACTTCTTACGAGTTGTGCCACAACTTGTGAAGTTAGCCGATTTT
GATATTACAGAAGAGCAATGGCAAGACCACGTCACGCATTTCGTCGCACAATTGAAGGCTAAGCAGATGACGTTGCAAGA
TGTCACACCTTATCTTCACCTCTACGATTTGATGACGGGTAAAAAAGGCGAACGTGATATGCGTTTTGTCTTCATCGATG
AAATTCAAGATTACACGCCTTATGAATTGGCCTTCTTGAAGCTCCACTTCCCTAAGGCGCGCTTCACATTATTGGGCGAT
TTGAATCAAGCGATTTTCACTAAAGGCAACAGCACAAATCTCTTGCAACAAGTCCAACAATTATTTGATGCCCAAAATAC
AAAAGTGGTGCAATTAACACGTTCATACCGGTCAACGCAACAAGTGACCGACTTTACCAAAGGCTTATTAAAAGGTGGCC
AAGCCATCGAAGCCTTCAACCGAGTTGGCGATAAACCAAATTTGATTGTGCGCCAATCAGAAGCTGAGTTAGTGGCTGAT
GTTAACCGCCAATTAGCCGCAAATGAAGCGGATAAATTATCGACGGCGATTATTACCAAGACATTGGTGCAAGCCCAAGA
ATTGACGAAGATGCTCAAGGAAACGGGAACCAAAGTCACCTTGATTCGTTCCGAAAACCAACGTTTAGCAGCCGGGACAT
TAGTGGTCCCAAGTTTCTTAGCTAAAGGTTTGGAATTCGATGCCATTATTGGTTGGCAAATCAGTGCCGCCAACTACAAT
CATGAAGATCAACGGCAATTGCTCTACACGATTTGTTCAAGAGCAATGCATCGCTTGACCTTGTTAGCCACTGATGAACT
CTCACCACTGATTGATAACGTCGATCCAGAAAAATATACATTAACAAAATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(700-741)

AAA domain (AAA_19)

(214-566)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

38.501

100

0.391