Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   OTU47_RS01265 Genome accession   NZ_CP113115
Coordinates   242531..243124 (-) Length   197 a.a.
NCBI ID   WP_000271489.1    Uniprot ID   Q8DRE8
Organism   Streptococcus pneumoniae strain NP2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 237531..248124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTU47_RS01240 (OTU47_01240) - 238222..239166 (+) 945 WP_000815629.1 magnesium transporter CorA family protein -
  OTU47_RS01245 (OTU47_01245) - 239178..239861 (+) 684 WP_000078022.1 DUF1129 domain-containing protein -
  OTU47_RS01250 (OTU47_01250) - 240116..241147 (+) 1032 WP_130885031.1 S66 peptidase family protein -
  OTU47_RS01255 (OTU47_01255) - 241284..241961 (-) 678 WP_000987420.1 CPBP family intramembrane glutamic endopeptidase -
  OTU47_RS01260 (OTU47_01260) - 241958..242521 (-) 564 WP_000166586.1 DNA-3-methyladenine glycosylase I -
  OTU47_RS01265 (OTU47_01265) ruvA 242531..243124 (-) 594 WP_000271489.1 Holliday junction branch migration protein RuvA Machinery gene
  OTU47_RS01270 (OTU47_01270) ribD 243530..244630 (+) 1101 WP_001284096.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  OTU47_RS01275 (OTU47_01275) ribE 244615..245250 (+) 636 WP_267749958.1 riboflavin synthase -
  OTU47_RS01280 (OTU47_01280) - 245270..246475 (+) 1206 WP_267749957.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  OTU47_RS01285 (OTU47_01285) ribE 246476..246943 (+) 468 WP_001099502.1 6,7-dimethyl-8-ribityllumazine synthase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21548.06 Da        Isoelectric Point: 7.3085

>NTDB_id=689749 OTU47_RS01265 WP_000271489.1 242531..243124(-) (ruvA) [Streptococcus pneumoniae strain NP2]
MYAYLKGIITKITAKYIVLETNGIGYILHVANPYAYSGQVNQEAQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVAGDGLPAKVAVQASAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=689749 OTU47_RS01265 WP_000271489.1 242531..243124(-) (ruvA) [Streptococcus pneumoniae strain NP2]
ATGTACGCATATTTAAAAGGAATCATTACCAAAATTACTGCCAAATACATTGTTCTTGAAACCAATGGTATTGGTTATAT
CCTGCATGTGGCCAATCCTTATGCCTATTCAGGTCAGGTTAATCAGGAGGCTCAGATTTATGTGCATCAGGTTGTGCGTG
AGGACGCCCATTTGCTTTATGGATTTCGCTCAGAGGATGAGAAAAAGCTCTTTCTTAGTCTGATTTCGGTCTCTGGGATT
GGTCCTGTATCAGCTCTTGCTATTATCGCTGCTGATGACAATGCTGGCTTGGTTCAAGCCATTGAAACCAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTAGTTG
CAGGAGATGGCCTTCCTGCCAAGGTCGCAGTGCAAGCAAGTGCTGAAAACCAAGAATTGGAAGAAGCTATGGAAGCCATG
TTGGCTCTGGGCTACAAGGCAACAGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAAATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DRE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

100

100

1
  ruvA Streptococcus pneumoniae D39

100

100

1
  ruvA Streptococcus pneumoniae TIGR4

99.492

100

0.995
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.806

100

0.416