Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   M5E02_RS19390 Genome accession   NZ_CP097373
Coordinates   3768745..3769287 (-) Length   180 a.a.
NCBI ID   WP_007497456.1    Uniprot ID   A0A5K1N7D0
Organism   Bacillus safensis strain AHB2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3763745..3774287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E02_RS19365 (M5E02_19365) - 3764048..3764656 (-) 609 WP_034622294.1 alpha/beta hydrolase -
  M5E02_RS19370 (M5E02_19370) - 3764653..3765603 (-) 951 WP_095410035.1 ring-cleaving dioxygenase -
  M5E02_RS19375 (M5E02_19375) opuFB 3765814..3767331 (-) 1518 WP_252057104.1 osmoprotectant update ABC transporter permease/substrate-binding subunit OpuFB -
  M5E02_RS19380 (M5E02_19380) - 3767324..3768289 (-) 966 WP_252057105.1 ABC transporter ATP-binding protein -
  M5E02_RS19385 (M5E02_19385) rpsR 3768465..3768704 (-) 240 WP_008359105.1 30S ribosomal protein S18 -
  M5E02_RS19390 (M5E02_19390) ssbA 3768745..3769287 (-) 543 WP_007497456.1 single-stranded DNA-binding protein SsbA Machinery gene
  M5E02_RS19395 (M5E02_19395) rpsF 3769324..3769611 (-) 288 WP_024424058.1 30S ribosomal protein S6 -
  M5E02_RS19400 (M5E02_19400) ychF 3769720..3770820 (-) 1101 WP_048238325.1 redox-regulated ATPase YchF -
  M5E02_RS19405 (M5E02_19405) - 3771037..3771243 (-) 207 WP_008347561.1 DUF951 domain-containing protein -
  M5E02_RS19410 (M5E02_19410) - 3771538..3772857 (+) 1320 WP_252057106.1 hydrolase -
  M5E02_RS19415 (M5E02_19415) - 3772873..3773283 (+) 411 WP_034283636.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19605.15 Da        Isoelectric Point: 4.6109

>NTDB_id=689230 M5E02_RS19390 WP_007497456.1 3768745..3769287(-) (ssbA) [Bacillus safensis strain AHB2]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=689230 M5E02_RS19390 WP_007497456.1 3768745..3769287(-) (ssbA) [Bacillus safensis strain AHB2]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ACCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAATAGCTTCAAT
GATGACCCATTTGCGAACGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1N7D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

85.556

100

0.856
  ssb Latilactobacillus sakei subsp. sakei 23K

55.376

100

0.572
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.889

0.378
  ssb Glaesserella parasuis strain SC1401

35.714

100

0.361