Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   OSV61_RS02975 Genome accession   NZ_CP113069
Coordinates   612944..613459 (-) Length   171 a.a.
NCBI ID   WP_005130886.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 29D2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 607944..618459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSV61_RS02950 (OSV61_02950) - 608489..610132 (+) 1644 WP_002061398.1 nitrite/sulfite reductase -
  OSV61_RS02955 (OSV61_02955) - 610125..610610 (+) 486 WP_000935247.1 DUF934 domain-containing protein -
  OSV61_RS02960 (OSV61_02960) - 610693..611046 (+) 354 WP_033851874.1 SMR family transporter -
  OSV61_RS02965 (OSV61_02965) - 611089..611532 (-) 444 WP_001176580.1 VOC family protein -
  OSV61_RS02970 (OSV61_02970) - 611660..612835 (-) 1176 WP_065718243.1 thiolase family protein -
  OSV61_RS02975 (OSV61_02975) fimT 612944..613459 (-) 516 WP_005130886.1 GspH/FimT family pseudopilin Machinery gene
  OSV61_RS02980 (OSV61_02980) omp38 613841..614911 (+) 1071 WP_000777878.1 outer membrane protein Omp38 -
  OSV61_RS02985 (OSV61_02985) - 615036..615179 (-) 144 WP_162138624.1 hypothetical protein -
  OSV61_RS02990 (OSV61_02990) - 615198..616403 (-) 1206 WP_000512707.1 RtcB family protein -
  OSV61_RS02995 (OSV61_02995) - 616680..618140 (-) 1461 WP_000004971.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19620.88 Da        Isoelectric Point: 8.8196

>NTDB_id=688692 OSV61_RS02975 WP_005130886.1 612944..613459(-) (fimT) [Acinetobacter baumannii strain 29D2]
MFKSPGFTIVELTITLIILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=688692 OSV61_RS02975 WP_005130886.1 612944..613459(-) (fimT) [Acinetobacter baumannii strain 29D2]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCATAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427