Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   OS079_RS11135 Genome accession   NZ_CP113042
Coordinates   2196788..2197561 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain Seraphine     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2191788..2202561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS079_RS11115 trmFO 2192132..2193439 (+) 1308 WP_267811032.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  OS079_RS11120 xerC 2193856..2194752 (+) 897 WP_267836516.1 tyrosine recombinase XerC -
  OS079_RS11125 hslV 2194749..2195294 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  OS079_RS11130 hslU 2195360..2196763 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  OS079_RS11135 codY 2196788..2197561 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  OS079_RS11140 - 2197612..2197704 (+) 93 WP_001790530.1 hypothetical protein -
  OS079_RS11145 rpsB 2197903..2198670 (+) 768 WP_098691817.1 30S ribosomal protein S2 -
  OS079_RS11150 - 2198704..2198817 (+) 114 WP_001789890.1 hypothetical protein -
  OS079_RS11155 tsf 2198852..2199733 (+) 882 WP_000201387.1 translation elongation factor Ts -
  OS079_RS11160 pyrH 2199870..2200592 (+) 723 WP_000057330.1 UMP kinase -
  OS079_RS11165 frr 2200611..2201165 (+) 555 WP_001280006.1 ribosome recycling factor -
  OS079_RS11170 - 2201538..2202308 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=688189 OS079_RS11135 WP_000055337.1 2196788..2197561(+) (codY) [Staphylococcus aureus strain Seraphine]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=688189 OS079_RS11135 WP_000055337.1 2196788..2197561(+) (codY) [Staphylococcus aureus strain Seraphine]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428