Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   M3M92_RS08000 Genome accession   NZ_CP097165
Coordinates   1659058..1659888 (-) Length   276 a.a.
NCBI ID   WP_069468886.1    Uniprot ID   A0A1D7TQH8
Organism   Ligilactobacillus salivarius strain VHProbi A17     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1654058..1664888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3M92_RS07980 (M3M92_07950) - 1655188..1656144 (+) 957 WP_069468889.1 DhaKLM operon coactivator DhaQ -
  M3M92_RS07985 (M3M92_07955) dhaS 1656145..1656669 (-) 525 WP_069468888.1 dihydroxyacetone kinase transcriptional activator DhaS -
  M3M92_RS07990 (M3M92_07960) brnQ 1656816..1658198 (-) 1383 WP_069468887.1 branched-chain amino acid transport system II carrier protein -
  M3M92_RS07995 (M3M92_07965) - 1658737..1659003 (+) 267 WP_003701014.1 hypothetical protein -
  M3M92_RS08000 (M3M92_07970) endA 1659058..1659888 (-) 831 WP_069468886.1 DNA/RNA non-specific endonuclease Machinery gene
  M3M92_RS08005 (M3M92_07975) - 1660256..1660858 (+) 603 WP_069468885.1 nitroreductase family protein -
  M3M92_RS08010 (M3M92_07980) - 1660912..1662843 (-) 1932 WP_069468884.1 heavy metal translocating P-type ATPase -
  M3M92_RS08015 (M3M92_07985) - 1662966..1663307 (+) 342 WP_003701009.1 metalloregulator ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 30438.78 Da        Isoelectric Point: 10.4970

>NTDB_id=687579 M3M92_RS08000 WP_069468886.1 1659058..1659888(-) (endA) [Ligilactobacillus salivarius strain VHProbi A17]
MARKKKNKSNKFMRWLATVAVGVALAAVGVNTSHISTPFNNEVVNSSTYNKKDYTPTEEQASVVLTDNVRQQLGGNLSFN
GAGAFIVNNNKTNLNTKVSSAPYAVNEVDSLNRPTVANAWLNRTSRQYKNRQATGNGRTSWKPQGFRQVQNLPGRFKHAY
DRGHLLAYALVGNVRGFDASESNEKNIATQTAWANESASKDSTGQNYYEGLVRKALDRNKQVRYRVTDVYDGNNLVPAGA
HLEAKSSDGSLEFNVFVPNVQTNININYATGQATRK

Nucleotide


Download         Length: 831 bp        

>NTDB_id=687579 M3M92_RS08000 WP_069468886.1 1659058..1659888(-) (endA) [Ligilactobacillus salivarius strain VHProbi A17]
ATGGCAAGAAAAAAGAAAAATAAATCAAATAAATTTATGAGATGGTTAGCTACCGTAGCAGTAGGGGTTGCTTTAGCAGC
CGTGGGAGTTAATACAAGTCATATCAGTACACCTTTTAATAATGAAGTTGTGAATAGCAGTACATATAATAAGAAAGACT
ACACACCTACAGAGGAGCAGGCGAGTGTAGTATTAACAGATAATGTACGCCAACAATTAGGTGGTAATTTAAGCTTTAAT
GGGGCAGGAGCTTTCATTGTAAATAATAATAAGACTAACTTAAATACAAAAGTTTCTAGTGCACCATATGCTGTTAATGA
GGTTGATTCATTGAATCGACCAACCGTTGCGAATGCTTGGCTAAATAGAACTAGTCGTCAATATAAAAATCGTCAAGCTA
CAGGAAATGGGCGTACAAGTTGGAAGCCACAAGGATTTAGACAGGTACAAAACTTACCAGGTAGATTCAAGCATGCTTAT
GATAGAGGACATTTATTAGCATATGCGCTTGTGGGAAATGTTAGAGGGTTTGATGCTTCTGAATCTAATGAAAAGAATAT
AGCCACTCAAACTGCATGGGCTAATGAATCAGCTTCTAAGGATTCTACCGGACAAAATTACTACGAAGGATTGGTAAGAA
AAGCTTTAGATAGAAACAAGCAGGTTCGTTATCGTGTGACAGATGTCTATGATGGTAATAATCTAGTGCCAGCAGGAGCA
CATTTGGAAGCTAAATCATCAGATGGTTCGCTAGAATTTAATGTATTTGTGCCTAATGTACAAACTAACATAAATATTAA
TTATGCTACAGGACAAGCTACTAGGAAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(83-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D7TQH8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

60.538

80.797

0.489
  endA Streptococcus pneumoniae D39

60.538

80.797

0.489
  endA Streptococcus pneumoniae R6

60.538

80.797

0.489
  endA Streptococcus pneumoniae TIGR4

60.538

80.797

0.489