Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   CCX78_RS08420 Genome accession   NZ_AP017931
Coordinates   1630961..1632760 (+) Length   599 a.a.
NCBI ID   WP_172425610.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain LK-145     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1625961..1637760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX78_RS08400 (LASAK_01658) - 1627160..1627891 (-) 732 WP_056947344.1 GntR family transcriptional regulator -
  CCX78_RS08410 (LASAK_01659) - 1628195..1629430 (-) 1236 WP_056947341.1 NupC/NupG family nucleoside CNT transporter -
  CCX78_RS08415 (LASAK_01660) - 1629575..1630762 (-) 1188 WP_096585487.1 LCP family protein -
  CCX78_RS08420 (LASAK_01661) pepF 1630961..1632760 (+) 1800 WP_172425610.1 oligoendopeptidase F Regulator
  CCX78_RS08425 (LASAK_01662) - 1632797..1633573 (-) 777 WP_011373994.1 metal ABC transporter permease -
  CCX78_RS08430 (LASAK_01663) - 1633608..1634288 (-) 681 WP_056947332.1 metal ABC transporter ATP-binding protein -
  CCX78_RS08435 (LASAK_01664) - 1634285..1635172 (-) 888 WP_056947329.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  CCX78_RS08440 (LASAK_01665) - 1635322..1635942 (-) 621 WP_096585493.1 hypothetical protein -
  CCX78_RS08445 (LASAK_01666) - 1635966..1637507 (-) 1542 WP_056947324.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 67605.36 Da        Isoelectric Point: 4.4710

>NTDB_id=68606 CCX78_RS08420 WP_172425610.1 1630961..1632760(+) (pepF) [Latilactobacillus sakei strain LK-145]
MHKLPTRSEVPENLTWDLSTIFKSDSDFEVAVATLKQALPALEQYNQPFKTADQLVTTIEQVLTLFRQLETVYVYASMKN
DQDTANTTYQGYQAQVDALAADVSAAAAFLEPAILEIPVDQLTDWQTNEPALKSYQHFIQTITDSREHVLSGQEEALIAA
AGDIFGAASQTFSVLDNSDIQFPDVVDETGQTHQLSNGLYSQLLQSTDRQVRQDVFEALYSTYDQFKNTFATTLATEIKG
HNYLAQVHHYDSARQAALAPKAIPESVYTTLVDQVNQHLPLLHRYVKLRQKQLALPQLHMYDLYTPLLGKPALSYTYPQA
QTTAREALAVLGPEYTPIVDQIFDQRQIDVVENKGKRSGAYSGGAYDTNPFILLNWQDDLNNLYTLVHETGHSVHSYLTR
HNQPYVYGDYPIFVAEIASTTNENLLTEYLLKTQKDPKVQAYLLNYYLDGFKGTVFRQTQFAEFEHYIHDAAANGTPLTA
DFMSTYYADLNAHYYGDAVAKDPQIALEWARIPHFYMNYYVYQYATGFAAATTLADQISTNQPGALDNYLAYLKNGSASY
PIETMQKAGVDMTNVDYLEHAFDVFEQRLDQLEALLADM

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=68606 CCX78_RS08420 WP_172425610.1 1630961..1632760(+) (pepF) [Latilactobacillus sakei strain LK-145]
ATTCACAAATTACCCACACGCTCTGAAGTCCCTGAAAACTTAACCTGGGACCTCAGTACCATTTTCAAAAGCGACTCAGA
TTTCGAAGTAGCTGTCGCAACGCTCAAACAGGCACTACCAGCACTTGAACAATACAACCAACCGTTTAAAACGGCTGATC
AACTCGTAACAACGATTGAACAAGTGCTAACGCTCTTTAGACAGTTAGAAACGGTCTACGTTTACGCTAGCATGAAAAAC
GATCAAGATACAGCTAATACCACTTATCAAGGTTATCAAGCTCAGGTCGATGCTTTAGCAGCTGACGTTTCAGCGGCGGC
CGCCTTTTTAGAACCCGCTATCCTCGAAATTCCCGTTGACCAATTAACTGACTGGCAGACCAATGAGCCAGCACTTAAAA
GTTATCAACATTTTATCCAGACTATCACTGATAGCCGCGAACATGTCTTATCAGGTCAAGAAGAAGCCCTAATTGCCGCT
GCTGGCGATATCTTTGGTGCTGCTAGCCAAACCTTCAGTGTTTTGGATAACTCAGATATTCAATTCCCAGACGTTGTCGA
TGAAACCGGCCAAACGCATCAATTATCAAACGGCCTCTATAGCCAATTGTTACAATCAACCGATCGCCAGGTCCGCCAAG
ACGTCTTTGAAGCACTCTACAGCACTTATGATCAGTTCAAAAATACATTTGCGACAACCCTTGCGACTGAGATCAAAGGG
CACAACTACCTCGCTCAAGTCCATCACTACGACAGTGCGCGCCAAGCAGCCCTCGCACCTAAAGCCATTCCTGAATCAGT
CTACACGACCTTAGTCGACCAAGTGAACCAACATTTGCCATTATTACATCGTTATGTTAAATTACGTCAAAAGCAATTAG
CATTACCGCAATTGCATATGTACGACTTATACACACCACTTTTAGGCAAACCCGCTTTGAGCTACACTTATCCACAAGCA
CAAACAACAGCGCGCGAAGCATTAGCCGTCTTAGGGCCTGAATACACCCCAATTGTGGACCAAATCTTCGATCAACGGCA
AATTGATGTCGTTGAAAACAAAGGCAAGCGCAGCGGCGCTTACTCTGGTGGTGCTTACGATACCAATCCGTTCATTCTCT
TGAATTGGCAAGACGATCTTAACAACTTATACACACTGGTCCACGAAACTGGCCACAGTGTCCACAGTTATTTAACACGT
CACAATCAACCTTACGTTTATGGCGATTATCCAATCTTCGTCGCTGAAATTGCGTCAACAACGAATGAAAACCTGCTTAC
TGAATATCTTTTGAAGACCCAAAAAGATCCCAAAGTTCAAGCCTACTTGTTGAACTACTACCTTGATGGTTTCAAAGGGA
CTGTCTTCCGTCAAACACAATTTGCCGAATTCGAACACTATATTCACGATGCAGCAGCCAATGGAACCCCTCTAACGGCT
GACTTCATGTCAACTTACTACGCTGACTTAAACGCTCACTACTATGGCGATGCCGTCGCCAAAGATCCTCAAATTGCCTT
AGAATGGGCTCGGATTCCCCATTTTTACATGAACTATTACGTTTATCAATATGCAACTGGTTTTGCCGCTGCGACGACGC
TCGCTGATCAAATCAGTACGAACCAACCGGGTGCACTCGACAATTATCTCGCCTACCTCAAAAATGGGAGTGCCAGTTAC
CCAATTGAAACGATGCAAAAAGCCGGTGTGGATATGACTAACGTCGATTATCTCGAACACGCTTTTGATGTTTTTGAACA
ACGCCTCGATCAATTAGAAGCATTACTTGCTGATATGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-182)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.822

98.664

0.541

Multiple sequence alignment