Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   OHI04_RS02565 Genome accession   NZ_CP110849
Coordinates   504964..505605 (-) Length   213 a.a.
NCBI ID   WP_003131746.1    Uniprot ID   Q9CI22
Organism   Lactococcus lactis strain VHProbi V60     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 499964..510605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHI04_RS02545 (OHI04_02545) cysK 499995..500927 (-) 933 WP_270097260.1 cysteine synthase A -
  OHI04_RS02550 (OHI04_02550) - 501145..502230 (+) 1086 WP_039114689.1 LysM peptidoglycan-binding domain-containing protein -
  OHI04_RS02555 (OHI04_02555) - 502269..502901 (-) 633 WP_039114691.1 MBL fold metallo-hydrolase -
  OHI04_RS02560 (OHI04_02560) - 502902..504896 (-) 1995 WP_039114693.1 transglycosylase domain-containing protein -
  OHI04_RS02565 (OHI04_02565) recU 504964..505605 (-) 642 WP_003131746.1 Holliday junction resolvase RecU Machinery gene
  OHI04_RS02570 (OHI04_02570) - 505686..506210 (+) 525 WP_010905434.1 DUF1273 domain-containing protein -
  OHI04_RS02575 (OHI04_02575) spx 506370..506756 (+) 387 WP_010905435.1 transcriptional regulator Spx -
  OHI04_RS02580 (OHI04_02580) - 506848..507129 (+) 282 WP_003131743.1 UPF0223 family protein -
  OHI04_RS02585 (OHI04_02585) - 507095..507874 (+) 780 WP_039114695.1 inositol monophosphatase family protein -
  OHI04_RS02590 (OHI04_02590) murA 507968..509248 (+) 1281 WP_039116580.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  OHI04_RS02595 (OHI04_02595) - 509248..509439 (+) 192 WP_039114697.1 DNA-directed RNA polymerase subunit beta -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24369.13 Da        Isoelectric Point: 10.1344

>NTDB_id=685576 OHI04_RS02565 WP_003131746.1 504964..505605(-) (recU) [Lactococcus lactis strain VHProbi V60]
MVNYPNGRSRAYSTVPKKKKSLTELSVTKKSTSKTKGMVAFGKRGMNFEAEINATNEYYLSRGLAVIHKKPTPIQIVKVD
YPQRSRAKITEAYFRQASTTDYSGVYKGHYIDFEAKETQQKTVFPLKNFHEHQIVHMSNVLAQGGIAFVLLHFARLNETY
LLPSSCLITFYYEKGGLKSIPLSHIRENGYKIETNHIPRIPYLEIVNKLCEVQ

Nucleotide


Download         Length: 642 bp        

>NTDB_id=685576 OHI04_RS02565 WP_003131746.1 504964..505605(-) (recU) [Lactococcus lactis strain VHProbi V60]
ATGGTTAATTATCCTAATGGAAGGTCGCGAGCTTACAGCACTGTTCCTAAGAAAAAAAAATCACTGACAGAGCTGTCAGT
AACTAAAAAAAGCACCTCAAAAACCAAAGGGATGGTTGCCTTCGGGAAGCGGGGAATGAATTTTGAAGCTGAAATTAATG
CAACAAATGAGTATTATCTTTCTCGTGGACTTGCAGTTATTCACAAAAAGCCAACACCAATTCAAATCGTTAAAGTAGAT
TATCCACAAAGGAGTCGTGCAAAAATTACAGAAGCTTACTTCAGGCAAGCATCTACTACTGACTACTCTGGAGTCTATAA
AGGTCACTACATCGACTTTGAAGCAAAGGAAACACAGCAAAAAACTGTTTTCCCTCTAAAAAATTTCCATGAGCATCAAA
TTGTTCACATGAGTAATGTTCTCGCTCAAGGGGGAATTGCTTTTGTCCTCTTGCACTTTGCAAGGTTAAATGAAACATAT
CTTCTTCCATCTTCGTGTTTGATTACTTTTTATTACGAAAAAGGCGGTTTAAAGTCAATTCCGCTTTCTCATATTCGCGA
AAATGGCTATAAAATTGAAACGAACCACATTCCTAGAATTCCTTATCTAGAAATTGTGAATAAACTTTGTGAGGTACAGT
AA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(44-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CI22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

47.393

99.061

0.469