Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   OOZ27_RS02800 Genome accession   NZ_CP110634
Coordinates   529185..529619 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain MG-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 524185..534619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOZ27_RS02770 (OOZ27_02770) ydaD 524833..525693 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  OOZ27_RS02775 (OOZ27_02775) lyxE 525709..526212 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  OOZ27_RS02780 (OOZ27_02780) ydaF 526299..526850 (+) 552 WP_015715257.1 GNAT family N-acetyltransferase -
  OOZ27_RS02785 (OOZ27_02785) ydaG 526928..527350 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  OOZ27_RS02790 (OOZ27_02790) amj 527856..528665 (+) 810 WP_015715258.1 lipid II flippase Amj -
  OOZ27_RS02795 (OOZ27_02795) ydzA 528710..529000 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  OOZ27_RS02800 (OOZ27_02800) lrpC 529185..529619 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  OOZ27_RS02805 (OOZ27_02805) topB 529684..531867 (+) 2184 WP_015715259.1 DNA topoisomerase III -
  OOZ27_RS02810 (OOZ27_02810) ephJ 532070..533158 (+) 1089 WP_015715260.1 hypothetical protein -
  OOZ27_RS02815 (OOZ27_02815) epsK 533139..533990 (+) 852 WP_003234384.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=685067 OOZ27_RS02800 WP_003246585.1 529185..529619(+) (lrpC) [Bacillus subtilis strain MG-1]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=685067 OOZ27_RS02800 WP_003246585.1 529185..529619(+) (lrpC) [Bacillus subtilis strain MG-1]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGGCAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTAGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1