Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OM089_RS00240 Genome accession   NZ_CP110368
Coordinates   56486..57574 (+) Length   362 a.a.
NCBI ID   WP_003114641.1    Uniprot ID   Q9I7A6
Organism   Pseudomonas aeruginosa strain 18083286     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 51486..62574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM089_RS00220 rsmB 52381..53685 (-) 1305 WP_003161949.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  OM089_RS00225 fmt 53682..54626 (-) 945 WP_003131369.1 methionyl-tRNA formyltransferase -
  OM089_RS00230 def 54681..55187 (-) 507 WP_003107059.1 peptide deformylase -
  OM089_RS00235 tsaP 55326..56351 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  OM089_RS00240 dprA 56486..57574 (+) 1089 WP_003114641.1 DNA-processing protein DprA Machinery gene
  OM089_RS00245 - 57615..58172 (+) 558 WP_003097300.1 Sua5/YciO/YrdC/YwlC family protein -
  OM089_RS00250 - 58182..59159 (-) 978 WP_003111202.1 NADPH:quinone reductase -
  OM089_RS00255 hemF 59350..60267 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  OM089_RS00260 aroE 60325..61149 (+) 825 WP_003111201.1 shikimate dehydrogenase -
  OM089_RS00265 - 61260..62246 (+) 987 WP_003097316.1 phospholipase -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37719.24 Da        Isoelectric Point: 7.0742

>NTDB_id=684785 OM089_RS00240 WP_003114641.1 56486..57574(+) (dprA) [Pseudomonas aeruginosa strain 18083286]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPASAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGLR
RHLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEAGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=684785 OM089_RS00240 WP_003114641.1 56486..57574(+) (dprA) [Pseudomonas aeruginosa strain 18083286]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCAGCGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCTGCGC
AGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGCTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGGCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAGCTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGGCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCATCCCGG
CGCACGTGGCTGCCACCAACTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAGCCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGATGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(297-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9I7A6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

43.514

100

0.445
  dprA Vibrio cholerae strain A1552

43.048

100

0.445
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

43.048

100

0.445
  dprA Legionella pneumophila strain ERS1305867

43.38

98.066

0.425
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.254

98.066

0.414
  dprA Neisseria gonorrhoeae strain FA1090

44.918

84.254

0.378
  dprA Neisseria gonorrhoeae MS11

44.59

84.254

0.376
  dprA Neisseria meningitidis MC58

46.416

80.939

0.376
  dprA Neisseria meningitidis strain C311

46.416

80.939

0.376
  dprA Acinetobacter baumannii D1279779

38.286

96.685

0.37
  dprA Glaesserella parasuis strain SC1401

46.853

79.006

0.37
  dprA Acinetobacter baumannii strain A118

38

96.685

0.367