Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MYF74_RS13760 Genome accession   NZ_CP096837
Coordinates   2906447..2907076 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain PS10-3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2901447..2912076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYF74_RS13745 (MYF74_13745) helD 2901689..2903743 (-) 2055 WP_000420536.1 DNA helicase IV -
  MYF74_RS13750 (MYF74_13750) yccF 2903866..2904312 (+) 447 WP_001261235.1 YccF domain-containing protein -
  MYF74_RS13755 (MYF74_13755) yccS 2904322..2906484 (+) 2163 WP_072193450.1 YccS family putative transporter -
  MYF74_RS13760 (MYF74_13760) sxy/tfoX 2906447..2907076 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  MYF74_RS13765 (MYF74_13765) sulA 2907295..2907804 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  MYF74_RS13770 (MYF74_13770) ompA 2908161..2909216 (+) 1056 WP_000750414.1 porin OmpA -
  MYF74_RS13775 (MYF74_13775) matP 2909292..2909744 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  MYF74_RS13780 (MYF74_13780) ycbZ 2909930..2911690 (+) 1761 WP_248748078.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=684638 MYF74_RS13760 WP_000839153.1 2906447..2907076(-) (sxy/tfoX) [Escherichia coli strain PS10-3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=684638 MYF74_RS13760 WP_000839153.1 2906447..2907076(-) (sxy/tfoX) [Escherichia coli strain PS10-3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTATATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1