NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	M1S42_RS09805	Genome accession	NZ_CP096742
Coordinates	2040948..2041631 (-)	Length	227 a.a.
NCBI ID	WP_088773955.1	Uniprot ID	-
Organism	Acinetobacter baumannii strain 5671
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2035948..2046631

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M1S42_RS09775 (M1S42_09775)	-	2036254..2036697 (-)	444	WP_001246675.1	SRPBCC family protein	-
M1S42_RS09780 (M1S42_09780)	tadA	2036767..2037270 (-)	504	WP_000033178.1	tRNA adenosine(34) deaminase TadA	-
M1S42_RS09785 (M1S42_09785)	-	2037277..2038401 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
M1S42_RS09790 (M1S42_09790)	ung	2038398..2039111 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
M1S42_RS09795 (M1S42_09795)	-	2039162..2039758 (-)	597	WP_000908452.1	6-carboxytetrahydropterin synthase	-
M1S42_RS09800 (M1S42_09800)	gspK	2039989..2040948 (-)	960	WP_000301476.1	type II secretion system minor pseudopilin GspK	-
M1S42_RS09805 (M1S42_09805)	xcpW	2040948..2041631 (-)	684	WP_088773955.1	type II secretion system minor pseudopilin GspJ	Machinery gene
M1S42_RS09810 (M1S42_09810)	xcpV	2041649..2042029 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
M1S42_RS09815 (M1S42_09815)	-	2042019..2042573 (-)	555	WP_000841373.1	type II secretion system protein	-
M1S42_RS09820 (M1S42_09820)	-	2042583..2043191 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
M1S42_RS09825 (M1S42_09825)	-	2043229..2044002 (-)	774	WP_000497298.1	TatD family hydrolase	-
M1S42_RS09830 (M1S42_09830)	-	2044020..2044361 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
M1S42_RS09835 (M1S42_09835)	-	2044373..2045353 (-)	981	WP_001075411.1	DNA polymerase III subunit delta'	-
M1S42_RS09840 (M1S42_09840)	kdsB	2045365..2046126 (-)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 227 a.a. Molecular weight: 25879.63 Da Isoelectric Point: 8.3219

                                >NTDB_id=683592 M1S42_RS09805 WP_088773955.1 2040948..2041631(-) (xcpW) [Acinetobacter baumannii strain 5671]

MHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQILRDTL

QIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLSSTLLSQ

VDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

Download Length: 684 bp

                                >NTDB_id=683592 M1S42_RS09805 WP_088773955.1 2040948..2041631(-) (xcpW) [Acinetobacter baumannii strain 5671]

ATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCGCGCCTCAGGATTTACTTT

GGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTTTCGATTACTTGCTCAAAG

TTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAAATTCTTCGTGATACTTTG

CAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAATCAAATTTTACGTTTTAG

CAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATCGTTATGATGCAGACCAAA

AAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCGAGTACTTTGTTAAGTCAA

GTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAATATTGATCCAACGAAACC

TAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATTATGAGTGGATTTATAGCT

TAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(77-206)

Prokaryotic N-terminal methylation motif (N_methyl)

(21-43)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	99.119	100	0.991

Detailed information NTG0683592