Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD/cglD   Type   Machinery gene
Locus tag   NOV96_RS09980 Genome accession   NZ_CP110141
Coordinates   2040441..2040848 (-) Length   135 a.a.
NCBI ID   WP_014636753.1    Uniprot ID   -
Organism   Streptococcus suis strain WUSS030     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2035441..2045848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOV96_RS09950 (NOV96_09950) - 2036254..2036805 (-) 552 WP_014636756.1 folate family ECF transporter S component -
  NOV96_RS09955 (NOV96_09955) - 2037120..2038307 (-) 1188 WP_002936543.1 acetate kinase -
  NOV96_RS09960 (NOV96_09960) comGH 2038357..2039310 (-) 954 WP_002936545.1 class I SAM-dependent methyltransferase Machinery gene
  NOV96_RS09965 (NOV96_09965) comGG 2039367..2039777 (-) 411 WP_002936546.1 competence type IV pilus minor pilin ComGG -
  NOV96_RS09970 (NOV96_09970) comGF/cglF 2039755..2040189 (-) 435 WP_002936547.1 competence type IV pilus minor pilin ComGF Machinery gene
  NOV96_RS09975 (NOV96_09975) comGE 2040176..2040469 (-) 294 WP_002936548.1 competence type IV pilus minor pilin ComGE Machinery gene
  NOV96_RS09980 (NOV96_09980) comGD/cglD 2040441..2040848 (-) 408 WP_014636753.1 competence type IV pilus minor pilin ComGD Machinery gene
  NOV96_RS09985 (NOV96_09985) comGC 2040829..2041110 (-) 282 WP_002936550.1 competence type IV pilus major pilin ComGC Machinery gene
  NOV96_RS09990 (NOV96_09990) comGB 2041112..2042149 (-) 1038 WP_255195823.1 competence type IV pilus assembly protein ComGB Machinery gene
  NOV96_RS09995 (NOV96_09995) comGA 2042061..2043011 (-) 951 WP_002936562.1 competence type IV pilus ATPase ComGA Machinery gene
  NOV96_RS10000 (NOV96_10000) - 2043097..2044047 (+) 951 WP_002936565.1 S66 peptidase family protein -
  NOV96_RS10005 (NOV96_10005) - 2044082..2044447 (-) 366 WP_002936568.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15326.63 Da        Isoelectric Point: 9.6573

>NTDB_id=683365 NOV96_RS09980 WP_014636753.1 2040441..2040848(-) (comGD/cglD) [Streptococcus suis strain WUSS030]
MLRRKNKAFTLFESLLTLLVVSFLAVSLSGTVQTVFRSVQEEIFLWEFEAIYKDSQKLAASFHQKVNLAIGGQEVTNGYQ
AVQVPRNIEVLEGKTITLEEDGGNSSLTKIRFRLSQKIVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=683365 NOV96_RS09980 WP_014636753.1 2040441..2040848(-) (comGD/cglD) [Streptococcus suis strain WUSS030]
ATGCTACGGCGAAAAAATAAGGCTTTTACCCTGTTTGAAAGCCTGCTGACCTTGTTGGTTGTCAGTTTTTTAGCTGTTTC
CTTATCAGGAACAGTACAAACGGTCTTTCGGTCTGTTCAGGAAGAAATTTTTCTCTGGGAATTTGAGGCCATCTATAAAG
ACAGTCAGAAATTGGCAGCTAGTTTCCACCAAAAAGTGAACCTTGCTATCGGTGGACAGGAGGTTACAAATGGTTATCAG
GCTGTACAGGTACCCAGAAATATAGAAGTGTTGGAAGGGAAGACCATTACACTTGAAGAAGATGGTGGAAATTCTTCTCT
GACCAAGATTCGTTTTCGGCTTAGTCAAAAAATAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD/cglD Streptococcus pneumoniae Rx1

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae D39

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae R6

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae TIGR4

46.512

95.556

0.444
  comGD Streptococcus gordonii str. Challis substr. CH1

47.244

94.074

0.444
  comGD/cglD Streptococcus mitis NCTC 12261

45.736

95.556

0.437
  comGD Streptococcus mutans UA140

45.736

95.556

0.437
  comGD Streptococcus mutans UA159

45.736

95.556

0.437
  comGD/cglD Streptococcus mitis SK321

44.961

95.556

0.43