Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   NOV96_RS02995 Genome accession   NZ_CP110141
Coordinates   592965..593618 (+) Length   217 a.a.
NCBI ID   WP_176243952.1    Uniprot ID   -
Organism   Streptococcus suis strain WUSS030     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 587965..598618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOV96_RS02980 (NOV96_02980) - 588945..590234 (+) 1290 WP_014636745.1 IS4-like element ISSsu2 family transposase -
  NOV96_RS02985 (NOV96_02985) - 590345..591565 (+) 1221 WP_228477683.1 LPXTG cell wall anchor domain-containing protein -
  NOV96_RS02990 (NOV96_02990) - 592032..592733 (-) 702 WP_002936280.1 CPBP family intramembrane glutamic endopeptidase -
  NOV96_RS02995 (NOV96_02995) scnR 592965..593618 (+) 654 WP_176243952.1 response regulator transcription factor Regulator
  NOV96_RS03000 (NOV96_03000) - 593620..595008 (+) 1389 WP_002936278.1 HAMP domain-containing sensor histidine kinase -
  NOV96_RS03005 (NOV96_03005) - 595396..595947 (+) 552 WP_240016643.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NOV96_RS03010 (NOV96_03010) - 596057..596867 (-) 811 Protein_566 IS5 family transposase -
  NOV96_RS03015 (NOV96_03015) - 597023..597931 (-) 909 WP_002936272.1 neutral zinc metallopeptidase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 24841.98 Da        Isoelectric Point: 4.7905

>NTDB_id=683318 NOV96_RS02995 WP_176243952.1 592965..593618(+) (scnR) [Streptococcus suis strain WUSS030]
MSRILVVEDDIVISQVVCEFLKEHGYQVESVFDGKVALERFQEEQFDLIVLDIMIPSMTGLEVLKEIRKTSQIPILMLTA
MGDEYTQLISFNQIISDYVVKPFSPTILVKRIENILRGKGETDSIEIGTILIQPTSGAVYMEEEEEVQLTKKEYEVLLYL
AKRRGKIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLPLKTIVGRGYQIEGT

Nucleotide


Download         Length: 654 bp        

>NTDB_id=683318 NOV96_RS02995 WP_176243952.1 592965..593618(+) (scnR) [Streptococcus suis strain WUSS030]
ATGTCAAGGATTTTGGTTGTAGAGGATGACATAGTTATTAGTCAAGTTGTTTGTGAGTTTTTAAAAGAACATGGTTATCA
GGTAGAATCTGTTTTTGATGGAAAGGTTGCTTTAGAAAGGTTTCAAGAAGAACAATTCGATTTAATTGTTTTAGATATCA
TGATTCCATCTATGACAGGTTTGGAAGTACTGAAGGAAATTCGCAAAACTTCTCAGATTCCAATTTTGATGCTGACAGCC
ATGGGTGACGAATATACACAGCTTATTAGTTTTAATCAGATTATAAGTGATTATGTTGTTAAACCATTTTCACCAACTAT
ATTGGTAAAACGGATTGAGAATATTTTGAGAGGAAAAGGAGAGACAGATAGCATTGAGATAGGAACAATTCTTATTCAAC
CAACTAGCGGGGCAGTTTATATGGAAGAAGAAGAAGAAGTTCAATTGACGAAAAAAGAATATGAAGTTTTACTATATTTA
GCTAAACGACGTGGGAAAATTGTTAGTCGTGATAACTTGATGATGGGAATATGGGGATATACGGAATTGGATAGTCGTGT
CTTAGATAATCATATCAAGAATATCCGTAAGAAATTGCCGTCACTTCCTTTGAAGACAATAGTTGGTCGTGGTTATCAAA
TAGAGGGTACTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-214)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

39.648

100

0.415
  micA Streptococcus pneumoniae Cp1015

38.496

100

0.401
  vicR Streptococcus mutans UA159

37.004

100

0.387