Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   M1S16_RS01610 Genome accession   NZ_CP096729
Coordinates   342726..343544 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 5729     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 337726..348544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1S16_RS01580 (M1S16_01580) ispH 338394..339344 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  M1S16_RS01585 (M1S16_01585) - 339357..339476 (-) 120 Protein_302 hypothetical protein -
  M1S16_RS01590 (M1S16_01590) - 339553..340640 (+) 1088 WP_249375126.1 IS4-like element ISAba1 family transposase -
  M1S16_RS01595 (M1S16_01595) fimU 340700..341173 (+) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  M1S16_RS01600 (M1S16_01600) pilV 341167..341727 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  M1S16_RS01605 (M1S16_01605) pilW 341728..342729 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  M1S16_RS01610 (M1S16_01610) pilX 342726..343544 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  M1S16_RS01615 (M1S16_01615) pilY1 343556..347410 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  M1S16_RS01620 (M1S16_01620) pilY2 347423..347905 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  M1S16_RS01625 (M1S16_01625) pilE 347902..348327 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=683295 M1S16_RS01610 WP_000149374.1 342726..343544(+) (pilX) [Acinetobacter baumannii strain 5729]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=683295 M1S16_RS01610 WP_000149374.1 342726..343544(+) (pilX) [Acinetobacter baumannii strain 5729]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993